*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Rye-Rye, ExR
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Secale-ExR-4
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Rye - Rye, ExR [ View Map Set Info ]
Map Name: Secale-ExR-4
Map Start: 0
Map Stop: 59.3
Features by Type:
17 locus
17 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 17 of 17.
Rye - Rye, ExR - Secale-ExR-4
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
MWG573 locus 11.7 Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 6A mwg573 locus 76.8 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-6H MWG573 locus -58 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-6H MWG573 locus 15.39 () Automated name-based View Maps
Barley - Barley consensus 2 - Barley-Consensus2-6H MWG573(IF) locus 14.5 () Automated name-based View Maps
Barley - Barley, IxF - Hordeum-Graner2-6H MWG573 locus 10.2 () Automated name-based View Maps
Xpsr103 locus 7.3 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-7B Xpsr103 locus 41 () Automated name-based View Maps
Rye - Rye, Hannover - Secale-Wricke-4R Xpsr103 locus 24.8 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-4R Xpsr103 locus 51.6 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-7ABD Xpsr103 locus -32 () Automated name-based, Automated name-based View Maps
Xcdo942 locus 35.2 Oat - Oat-2001-KxO-QTL - Oat-2001-KxO-QTL_27 Xcdo942 locus 35 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_23 Xcdo942 locus 6 (cM) Automated name-based View Maps
Oat - Oat-2003-OxM-QTL1 - Oat-2003-OxM-QTL1_6 Xcdo942 locus 6 (cM) Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-27 Xcdo942 locus 80 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_2 Xcdo942 locus 6 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_2 Xcdo942 locus 6 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_9 Xcdo942 locus 6 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_16 Xcdo942 locus 6 (cM) Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-27 Xcdo942 locus 43.4 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-4R Xcdo942 locus 10.1 () Automated name-based View Maps
Oat - Oat, KxO/QTL - Oat-KxO/Q-27 Xcdo942 locus 43.4 () Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-B Xcdo942 locus 116.2 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_27 Xcdo942 locus 35 (cM) Automated name-based View Maps
Xbcd327 locus 0 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-4D Xbcd327 locus 64 () Automated name-based View Maps
Oat - Oat-2002-KxO_Pal - Oat-2002-KxO-Pal_22 Xbcd327 locus 7.48 (cM) Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-4R Xbcd327 locus 53.9 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_1 Xbcd327 locus 26 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_8 Xbcd327 locus 26 (cM) Automated name-based View Maps
Oat - Oat, KxO/QTL - Oat-KxO/Q-22 Xbcd327 locus 4.1 () Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-22 Xbcd327 locus 8 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_22 Xbcd327 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_22 Xbcd327 locus 26 (cM) Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-22 Xbcd327 locus 4.1 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_1 Xbcd327 locus 26 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_15 Xbcd327 locus 26 (cM) Automated name-based View Maps
Oat - Oat-2003-OxM-QTL3 - Oat-2003-OxM-QTL3_1 Xbcd327 locus 24.3 (cM) Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-4A Xbcd327 locus 0 () Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO22_44+18 Xbcd327 locus 28.24 (cM) Automated name-based View Maps
Oat - Oat-2003-OxM-QTL1 - Oat-2003-OxM-QTL1_5 Xbcd327 locus 26 (cM) Automated name-based View Maps
Xuah82A locus 1.8 Rye - Rye_2009_consensus - Rye-2009-Consensus-4R Xuah82A locus 53.2 () Automated name-based View Maps
Xuah82B locus 1.8 Rye - Rye_2009_consensus - Rye-2009-Consensus-4R Xuah82B locus 52.6 () Automated name-based View Maps
Xuah82C locus 4.4 Rye - Rye_2009_consensus - Rye-2009-Consensus-4R Xuah82C locus 55.5 () Automated name-based View Maps
Xwg9 locus 4.4 Rye - Rye_2009_consensus - Rye-2009-Consensus-4R Xwg9 locus 55.5 () Automated name-based View Maps
Xbcd385 locus 4.4 Oat - Oat, KxO - Oat-KxO-23 Xbcd385 locus 35 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_16-23 Xbcd385 locus 22.5 (cM) Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-6 Xbcd385 locus 114 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-4R Xbcd385 locus 55.5 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-7ABD Xbcd385 locus -41 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-7B Xbcd385 locus 41 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-6R Xbcd385 locus 113.2 () Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-E Xbcd385 locus 105.8 () Automated name-based View Maps
OpS19B locus 4.4 Rye - Rye_2009_consensus - Rye-2009-Consensus-4R Xops19B locus 57.2 () Automated name-based View Maps
Xuah52 locus 14.1 Rye - Rye, UC90 x E-line - Secale-UxE-4 Xuah52 locus 74 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-4R Xuah52 locus 43.8 () Automated name-based View Maps
Xuah5 locus 22.7 Rye - Rye_2009_consensus - Rye-2009-Consensus-4R Xuah5 locus 35.4 () Automated name-based View Maps
Xuah74 locus 22.7 Rye - Rye_2009_consensus - Rye-2009-Consensus-4R Xuah74 locus 35.4 () Automated name-based View Maps
Xuah103B locus 36.7 Rye - Rye_2009_consensus - Rye-2009-Consensus-4R Xuah103B locus 25.6 () Automated name-based View Maps
OpR4R11 locus 39.1 Rye - Rye_2009_consensus - Rye-2009-Consensus-4R Xopr4R11 locus 19 () Automated name-based View Maps
Xbcd93 locus 47.5 Rye - Rye_2009_consensus - Rye-2009-Consensus-4R Xbcd93 locus 14.1 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-7ABD Xbcd93 locus -87 () Automated name-based, Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-7A Xbcd93 locus -43.3 () Automated name-based View Maps
Xcdo358 locus 59.3 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.