*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Rye-Rye, ExR
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Secale-ExR-6
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Rye - Rye, ExR [ View Map Set Info ]
Map Name: Secale-ExR-6
Map Start: 0
Map Stop: 73.3
Features by Type:
14 locus
14 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 14 of 14.
Rye - Rye, ExR - Secale-ExR-6
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xpsr371 locus 5.1 Rye - Rye_2009_consensus - Rye-2009-Consensus-6R Xpsr371 locus 66.4 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-6D Xpsr371 locus 87 () Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-6 Xpsr371 locus 66.8 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-6A Xpsr371 locus 0.7 () Automated name-based View Maps
Rye - Rye, Hannover - Secale-Wricke-6R Xpsr371 locus 22.7 () Automated name-based View Maps
Xpsr915 locus 18 Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 6A psr915 locus 38.5 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-6A Xpsr915 locus 1.4 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-6A Xpsr915 locus 103 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-6B Xpsr915 locus 131 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-6R Xpsr915 locus 75.7 () Automated name-based View Maps
Xcdo780 locus 5.1 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-8 Xcdo780 locus 32 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-8 Xcdo780 locus 21.7 () Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO8 Xcdo780 locus 21.18 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_8 Xcdo780 locus 25 (cM) Automated name-based View Maps
Oat - Oat, KxO/QTL - Oat-KxO/Q-8 Xcdo780 locus 21.7 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-7A Xcdo780 locus -43.3 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-7ABD Xcdo780 locus -84 () Automated name-based, Automated name-based View Maps
Xpsr142 locus 11.5 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-6D Xpsr142 locus 1.83 () Automated name-based, Automated name-based View Maps
Wheat D - T.tauschii - Tt-Gill-6D PSR142 locus 255.1 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-6R Xpsr142 locus 79 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-6ABD Xpsr142 locus 46 () Automated name-based, Automated name-based View Maps
OpT6 locus 0 Rye - Rye_2009_consensus - Rye-2009-Consensus-6R Xopt6 locus 54.2 () Automated name-based View Maps
Xuah61 locus 0 Rye - Rye, UC90 x E-line - Secale-UxE-6 Xuah61 locus 94.1 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-6R Xuah61 locus 92.1 () Automated name-based View Maps
Xuah103A locus 0 Rye - Rye_2009_consensus - Rye-2009-Consensus-6R Xuah103A locus 66.4 () Automated name-based View Maps
Xcdo772 locus 5.1 Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-G Xcdo772 locus 95.3 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-6A Xcdo772 locus 104 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-6B Xcdo772 locus 131 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-33 Xcdo772 locus 34.8 () Automated name-based View Maps
Oat - Oat, KxO/QTL - Oat-KxO/Q-33 Xcdo772 locus 34.8 () Automated name-based View Maps
Oat - Oat-2003-OxM-QTL1 - Oat-2003-OxM-QTL1_11 Xcdo772 locus 14.2 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_11 Xcdo772 locus 13 (cM) Automated name-based View Maps
OpS2 locus 11.5 No other positions
Xbcd758 locus 11.5 Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 6A bcd758 locus 36 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-6H BCD758 locus 90.18 () Automated name-based View Maps
Wheat ABD - Wheat, Yr Update, 2021 - Wheat_Yr_2021-6A bcd758 locus 101.62 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-6A Xbcd758 locus 99 () Automated name-based View Maps
Xcdo836 locus 68 Rye - Rye_2009_consensus - Rye-2009-Consensus-6R Xcdo836 locus 19.9 () Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-4 Xcdo836 locus 104.4 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-6B Xcdo836 locus 156 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-4R Xcdo836 locus 29.7 () Automated name-based View Maps
Xbcd276 locus 73.3 Barley - Barley consensus - Barley-Consensus-6H BCD276 locus 79.8 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-6H BCD276 locus 115.01 () Automated name-based View Maps
Barley - Barley, CxS - Hordeum-CxS-6H BCD276 locus 160.52 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-5H BCD276 locus 107.56 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-6H BCD276 locus 124.2 () Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-5H BCD276 locus 28.5 () Automated name-based View Maps
Barley - Barley, L94 x Vada, 2006 - Hv-L94/Vada-2006-6H BCD276 locus 116.12 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-6R Xbcd276 locus 12.7 () Automated name-based View Maps
Barley - Barley, CxH - Hordeum-CxH-5H BCD276 locus 45.33 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-6H BCD276 locus 114.7 () Automated name-based View Maps
Xbcd1 locus 73.3 Barley - Barley consensus - Barley-Consensus-6H BCD1 locus 23.2 () Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-6H BCD1 locus 85.9 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-6R Xbcd1 locus 14.1 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-6H BCD1 locus 128.5 () Automated name-based View Maps
Barley - Barley, CxS - Hordeum-CxS-6H BCD1 locus 168.52 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-6H BCD1 locus 171.42 () Automated name-based View Maps
Xbcd147 locus 73.3 Rye - Rye_2009_consensus - Rye-2009-Consensus-6R Xbcd147 locus 14.1 () Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-D Xbcd147 locus 33.5 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-3B Xbcd147 locus 63 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.