*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Rye-Rye, Hannover
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Secale-Wricke-1R
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Rye - Rye, Hannover [ View Map Set Info ]
Map Name: Secale-Wricke-1R
Map Start: 0
Map Stop: 59.9
Features by Type:
9 locus
9 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 9 of 9.
Rye - Rye, Hannover - Secale-Wricke-1R
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xpsr544 locus 54.2 Barley - Barley consensus 2003 - Barley-consensus-2003-1H PSR544 locus 37.8 () Automated name-based View Maps
Barley - Barley, CxH - Hordeum-CxH-1H PSR544 locus 67.12 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-1D Xpsr544 locus 4.46 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-1ABD Xpsr544 locus 40 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1D Xpsr544 locus 76 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-1H PSR544 locus 80.52 () Automated name-based View Maps
Centromere-R1 locus 50.5 Rye - Rye, Hannover - Secale-Philipp-1R Centromere-R1 locus 42 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-1 Centromere-R1 locus 53.1 () Automated name-based View Maps
Xiag95 locus 0 Rye - Rye, P87 x P105, update - Secale-PxP-update-1R Xiag95 locus 0.7 () Automated name-based View Maps
Wheat ABD - T1BL-1RS, Helios x Helami-105 - T1BL-1RS, Helios x Helami-105 Xiag95 locus 4.6 () Automated name-based View Maps
Rye - Rye, Hannover - Secale-Philipp-1R Xiag95 locus 0 () Automated name-based View Maps
Bm2 locus 54.2 Rye - Rye, P87 x P105, update - Secale-PxP-update-1R Xbm2 locus 62.3 () Automated name-based View Maps
Xiag229b locus 13.9 No other positions
OPR2-470 locus 33.6 No other positions
Per7 locus 49.7 Rye - Rye, Hannover - Secale-Philipp-1R Per7 locus 41.8 () Automated name-based View Maps
Xiag249 locus 52.4 No other positions
OPY11-1400H locus 59.9 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.