*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Rye-Rye, Hannover
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Secale-Wricke-2R
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Rye - Rye, Hannover [ View Map Set Info ]
Map Name: Secale-Wricke-2R
Map Start: 0.00
Map Stop: 255.20
Features by Type:
23 locus
23 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 23 of 23.
Rye - Rye, Hannover - Secale-Wricke-2R
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xpsr102 locus 94.40 Barley - Barley, BxGP - Hordeum-Laurie1-2H Xpsr102 locus 78.10 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-2R Xpsr102 locus 48.40 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-2R Xpsr102 locus 75.30 () Automated name-based View Maps
Barley - Barley, CxHs - Hordeum-Laurie2-2H Xpsr102 locus 86.10 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-2 Xpsr102 locus 49.70 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr102 locus 2.30 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-2A Xpsr102 locus 4.20 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2D Xpsr102 locus 2.78 () Automated name-based, Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xpsr102 locus 58.90 () Automated name-based View Maps
Xpsr107 locus 85.70 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-2A Xpsr107 locus 59.00 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xpsr107 locus 2.90 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-2R Xpsr107 locus 72.60 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr107 locus 0.00 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2ABD Xpsr107 locus -35.00 () Automated name-based, Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-2 Xpsr107 locus 3.10 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2D Xpsr107 locus -1.67 () Automated name-based, Automated name-based View Maps
Xpsr666 locus 0.00 Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xpsr666 locus 46.50 () Automated name-based View Maps
Barley - Barley, BxGP - Hordeum-Laurie1-2H Xpsr666 locus 21.80 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-2A Xpsr666 locus -31.80 () Automated name-based View Maps
Barley - Barley, IxT - Hordeum-Laurie5-2H Xpsr666 locus 17.70 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-2R Xpsr666 locus 3.90 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr666 locus -43.20 () Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-2H Xpsr666 locus -42.60 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-2R Xpsr666 locus 18.10 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2ABD Xpsr666 locus -92.00 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2D Xpsr666 locus -3.08 () Automated name-based, Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-2 Xpsr666 locus 5.40 () Automated name-based View Maps
Xiag33 locus 89.10 Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xiag33 locus 10.20 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-2R Xiag33 locus 47.50 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-2 Xiag33 locus 49.20 () Automated name-based View Maps
Centromere-R2 locus 89.50 Rye - Rye, P87 x P105 - Secale-PxP-2 Centromere-R2 locus 49.20 () Automated name-based View Maps
Xiag68 locus 145.80 Rye - Rye_2009_consensus - Rye-2009-Consensus-4R Xiag68 locus 68.10 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-2R Xiag68 locus 47.50 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xiag68 locus 59.70 () Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-4 Xiag68 locus 82.00 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-2 Xiag68 locus 49.20 () Automated name-based View Maps
Xiag167 locus 117.50 Rye - Rye, P87 x P105 - Secale-PxP-2 Xiag167 locus 64.40 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-2R Xiag167 locus 61.00 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xiag167 locus 18.50 () Automated name-based View Maps
Xiag240a locus 9.90 Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xiag240a locus 36.40 () Automated name-based View Maps
Xiag61a locus 12.50 Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xiag61a locus 47.40 () Automated name-based View Maps
Xiag57 locus 24.70 Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xiag57 locus 66.20 () Automated name-based View Maps
OPA5-530 locus 74.70 No other positions
OPM20-850E locus 91.80 No other positions
Xiag233 locus 102.40 Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xiag233 locus 10.20 () Automated name-based View Maps
Xiag235 locus 110.80 No other positions
Xiag267a locus 195.80 No other positions
Xiag61b locus 211.30 No other positions
Xiag240d locus 214.30 No other positions
beta-Glu locus 219.80 No other positions
Xiag69c locus 221.20 No other positions
Xiag229d locus 223.20 No other positions
Xiag240b locus 228.40 No other positions
OPO15-1200E locus 244.00 No other positions
OPR2-1800 locus 255.20 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.