*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Rye-Rye, N7 x N6, 2004
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Secale-N7xN6-2004-3R
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Rye - Rye, N7 x N6, 2004 [ View Map Set Info ]
Map Name: Secale-N7xN6-2004-3R
Map Start: 0
Map Stop: 154.9
Features by Type:
11 locus
11 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 11 of 11.
Rye - Rye, N7 x N6, 2004 - Secale-N7xN6-2004-3R
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
(Break) locus 32.1 Wheat ABD - Wheat, Conan x Reeder - Conan/Reeder-5D (Break) locus 120 () Automated name-based View Maps
Wheat ABD - Wheat, Arina x Forno - Triticum-AxF-2D (Break) locus 163 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR-D - Ta-Synthetic/Opata-SSR_D-7D (Break) locus 54 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR-D - Ta-Synthetic/Opata-SSR_D-3D (Break) locus 195 () Automated name-based View Maps
Wheat ABD - Wheat, Conan x Reeder - Conan/Reeder-6D (Break) locus 49 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR 2 - Ta-Synthetic/Opata-SSR2-3D (Break) locus 168.9 () Automated name-based View Maps
Wheat AB - Durum wheat, Svevo x Ciccio - Svevo/Ciccio-7A (Break) locus 108.2 () Automated name-based View Maps
Wheat ABD - Wheat, USG3209 x Jaypee - USG3209/Jaypee-3B (Break) locus 82 () Automated name-based View Maps
Wheat AB - T. turgidum, Messapia x dicoccoides, AFLP - Tturgidum-MxM-AFLP-2A (Break) locus 20.3 () Automated name-based View Maps
Wheat ABD - Wheat genes - Triticum-Genes-2D (Break) locus -46.4 () Automated name-based View Maps
Wheat ABD - Wheat, Conan x Reeder - Conan/Reeder-2A (Break) locus 33 () Automated name-based View Maps
Wheat ABD - Wheat, Kyoto - Ta-Kyoto-7D (Break) locus 13 () Automated name-based View Maps
Wheat ABD - Wheat, USG3209 x Jaypee - USG3209/Jaypee-6B (Break) locus 31 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR 2 - Ta-Synthetic/Opata-SSR2-4A (Break) locus 71.1 () Automated name-based View Maps
Wheat ABD - Wheat, USG3209 x Jaypee - USG3209/Jaypee-2D (Break) locus 30 () Automated name-based View Maps
Wheat ABD - Wheat, Conan x Reeder - Conan/Reeder-4D (Break) locus 138 () Automated name-based View Maps
Wheat ABD - Wheat, Conan x Reeder - Conan/Reeder-7A (Break) locus 43 () Automated name-based View Maps
Wheat ABD - Wheat genes - Triticum-Genes-2A (Break) locus -24.5 () Automated name-based View Maps
Wheat ABD - Wheat, Arina x Forno - Triticum-AxF-3A (Break) locus 26.5 () Automated name-based View Maps
Wheat AB - T. turgidum, Messapia x dicoccoides, AFLP - Tturgidum-MxM-AFLP-3A (Break) locus 80.2 () Automated name-based View Maps
Wheat ABD - Wheat genes - Triticum-Genes-4A (Break) locus -38.9 () Automated name-based View Maps
Wheat ABD - Wheat, Louise x Penawawa - Louise/Penawawa-3A (Break) locus 48 () Automated name-based View Maps
Wheat ABD - Wheat, Conan x Reeder - Conan/Reeder-7B (Break) locus 73 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR 2 - Ta-Synthetic/Opata-SSR2-1A (Break) locus 106.7 () Automated name-based View Maps
Wheat ABD - Wheat, Kyoto - Ta-Kyoto-2A (Break) locus 110 () Automated name-based View Maps
Wheat ABD - Wheat, Kyoto - Ta-Kyoto-4A (Break) locus 118 () Automated name-based View Maps
Wheat ABD - Wheat, Louise x Penawawa - Louise/Penawawa-1A (Break) locus 88 () Automated name-based View Maps
Wheat ABD - Wheat, Kyoto - Ta-Kyoto-2B (Break) locus 162 () Automated name-based View Maps
Wheat ABD - Wheat, WxM, FHB QTL - Triticum-WxM-FHB-QTL-3B (Break) locus 37.5 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR 2 - Ta-Synthetic/Opata-SSR2-7D (Break) locus 50 () Automated name-based View Maps
Wheat AB - Durum wheat, Svevo x Ciccio - Svevo/Ciccio-2B (Break) locus 50 () Automated name-based View Maps
Wheat ABD - Wheat, Conan x Reeder - Conan/Reeder-1B (Break) locus 103 () Automated name-based View Maps
Wheat ABD - Wheat, Louise x Penawawa - Louise/Penawawa-5B (Break) locus 93 () Automated name-based View Maps
Wheat ABD - Wheat, Kyoto - Ta-Kyoto-7A (Break) locus 42 () Automated name-based View Maps
Wheat A - T. boeoticum x monococcum - T.b.xT.m.-4A (Break) locus 28.3 () Automated name-based View Maps
Wheat ABD - Wheat sprouting markers - Ta-Anderson-1A (Break) locus 20 () Automated name-based View Maps
Wheat ABD - Wheat, Kyoto - Ta-Kyoto-5A (Break) locus 95 () Automated name-based View Maps
Wheat ABD - Wheat, Conan x Reeder - Conan/Reeder-3A (Break) locus 86 () Automated name-based View Maps
Wheat AB - T. turgidum, Omrabi5 x dicoccoides, QTL - Tt-Oxd-QTL-1B (Break) locus 181.7 () Automated name-based View Maps
Barley - Barley, Lx41 - Hordeum-Lx41-2H (Break) locus 39 () Automated name-based View Maps
Barley - Barley, Lx41 - Hordeum-Lx41-5H (Break) locus 23 () Automated name-based View Maps
Wheat ABD - Wheat, USG3209 x Jaypee - USG3209/Jaypee-1A (Break) locus 59 () Automated name-based View Maps
Barley - Barley, FxS, FHB QTL - Hordeum-FxS-FHB-QTL-4H (Break) locus 100.8 () Automated name-based View Maps
Wheat AB - T. turgidum, Messapia x dicoccoides, SSR - Tturgidum-SSR-7A (Break) locus -86 () Automated name-based View Maps
Wheat ABD - Wheat, Conan x Reeder - Conan/Reeder-3D (Break) locus 55 () Automated name-based View Maps
Wheat D - T.tauschii, Appels - Tt-Appels-7D (Break) locus 4 () Automated name-based View Maps
Wheat ABD - Wheat, Kyoto - Ta-Kyoto-6A (Break) locus 96 () Automated name-based View Maps
Rye - Rye, N7 x N2, 2004 - Secale-N7xN2-2004-3R (Break) locus 59.2 () Automated name-based View Maps
Wheat ABD - Wheat genes - Triticum-Genes-6D (Break) locus -48.7 () Automated name-based View Maps
Wheat D - T.tauschii, Appels - Tt-Appels-6D (Break) locus 10.15 () Automated name-based View Maps
Wheat AB - Durum wheat, Svevo x Ciccio - Svevo/Ciccio-7B (Break) locus 56.8 () Automated name-based View Maps
Wheat AB - Durum wheat, Svevo x Ciccio - Svevo/Ciccio-1B (Break) locus 84.9 () Automated name-based View Maps
Wheat ABD - Wheat, USG3209 x Jaypee - USG3209/Jaypee-3A (Break) locus 56 () Automated name-based View Maps
Wheat ABD - Wheat genes - Triticum-Genes-4D (Break) locus 8.1 () Automated name-based View Maps
Wheat ABD - Wheat, Conan x Reeder - Conan/Reeder-6A (Break) locus 83 () Automated name-based View Maps
Wheat ABD - Wheat, Kyoto - Ta-Kyoto-2D (Break) locus 84 () Automated name-based View Maps
Oat - Oat, X466-I x C237-89 - Oat, X466-I x C237-89 (Break) locus 5 () Automated name-based View Maps
Wheat ABD - Wheat, Conan x Reeder - Conan/Reeder-3B (Break) locus 112 () Automated name-based View Maps
Wheat ABD - Wheat, USG3209 x Jaypee - USG3209/Jaypee-1D (Break) locus 38 () Automated name-based View Maps
Wheat D - T.tauschii, Appels - Tt-Appels-5D (Break) locus 11.25 () Automated name-based View Maps
Wheat AB - T. turgidum, Messapia x dicoccoides, SSR - Tturgidum-SSR-2A (Break) locus -68.6 () Automated name-based View Maps
Wheat ABD - Wheat, Kyoto - Ta-Kyoto-5D (Break) locus 62 () Automated name-based View Maps
Wheat ABD - Wheat, Conan x Reeder - Conan/Reeder-7D (Break) locus 53 () Automated name-based View Maps
Barley - Barley, Lx41 - Hordeum-Lx41-1H (Break) locus 19 () Automated name-based View Maps
Rye - Rye, N7 x N6, 2004 - Secale-N7xN6-2004-6R (Break) locus 107.1 () Automated name-based View Maps
Wheat ABD - Wheat, Arina x Forno - Triticum-AxF-3D (Break) locus 102.3 () Automated name-based View Maps
Wheat AB - T. turgidum, Messapia x dicoccoides, AFLP - Tturgidum-MxM-AFLP-2B (Break) locus 14.5 () Automated name-based View Maps
Wheat ABD - Wheat, Arina x Forno - Triticum-AxF-3B (Break) locus 195 () Automated name-based View Maps
Wheat ABD - Wheat, Kyoto - Ta-Kyoto-6B (Break) locus 67 () Automated name-based View Maps
Rye - Rye, N7 x N2, 2004 - Secale-N7xN2-2004-6R (Break) locus 96 () Automated name-based View Maps
Wheat ABD - Wheat genes - Triticum-Genes-5D (Break) locus -12.9 () Automated name-based View Maps
Wheat ABD - Wheat, USG3209 x Jaypee - USG3209/Jaypee-5B (Break) locus 99 () Automated name-based View Maps
Wheat ABD - Wheat, Arina x Forno - Triticum-AxF-5B (Break) locus 91 () Automated name-based View Maps
Barley - Barley, VGxA - Hordeum-Giese1-5H (Break) locus 75 () Automated name-based View Maps
Wheat AB - Durum wheat, Svevo x Ciccio - Svevo/Ciccio-4A (Break) locus 27.2 () Automated name-based View Maps
Wheat ABD - Wheat genes - Triticum-Genes-6B (Break) locus -27.4 () Automated name-based View Maps
Wheat ABD - Wheat genes - Triticum-Genes-6A (Break) locus 14 () Automated name-based View Maps
Wheat AB - T. turgidum, Messapia x dicoccoides, AFLP - Tturgidum-MxM-AFLP-3B (Break) locus 86.4 () Automated name-based View Maps
Wheat ABD - Wheat genes - Triticum-Genes-1A (Break) locus -31.2 () Automated name-based View Maps
Wheat AB - T. turgidum, Messapia x dicoccoides, AFLP - Tturgidum-MxM-AFLP-7A (Break) locus 9.5 () Automated name-based View Maps
Wheat ABD - Wheat, Conan x Reeder - Conan/Reeder-5B (Break) locus 146 () Automated name-based View Maps
Wheat ABD - Wheat, Conan x Reeder - Conan/Reeder-1A (Break) locus 115 () Automated name-based View Maps
Wheat AB - T. turgidum, Messapia x dicoccoides, SSR - Tturgidum-SSR-3B (Break) locus 10.5 () Automated name-based View Maps
Wheat AB - Durum wheat, Svevo x Ciccio - Svevo/Ciccio-4B (Break) locus 24.1 () Automated name-based View Maps
Wheat ABD - Wheat, Louise x Penawawa - Louise/Penawawa-4A (Break) locus 66 () Automated name-based View Maps
Wheat D - T.tauschii, Appels - Tt-Appels-1D (Break) locus 23.3 () Automated name-based View Maps
Wheat ABD - Wheat genes - Triticum-Genes-4B (Break) locus -49.7 () Automated name-based View Maps
Wheat ABD - Wheat, Conan x Reeder - Conan/Reeder-5A (Break) locus 106 () Automated name-based View Maps
Wheat ABD - Wheat, Conan x Reeder - Conan/Reeder-4B (Break) locus 101 () Automated name-based View Maps
Rye - Rye, N6 x N2, 2004 - Secale-N6xN2-2004-6R (Break) locus 46.5 () Automated name-based View Maps
Wheat AB - T. turgidum, Messapia x dicoccoides, AFLP - Tturgidum-MxM-AFLP-4A (Break) locus 77.8 () Automated name-based View Maps
Wheat ABD - Wheat, USG3209 x Jaypee - USG3209/Jaypee-7A (Break) locus 97 () Automated name-based View Maps
Wheat ABD - Wheat, Kyoto - Ta-Kyoto-5B (Break) locus 121 () Automated name-based View Maps
Barley - Barley, HxT - Hordeum-NABGMP2-3H (Break) locus 24.7 () Automated name-based View Maps
Wheat ABD - Wheat, Arina x Forno - Triticum-AxF-5D (Break) locus 227 () Automated name-based View Maps
Rye - Rye, N7 x N2, 2004 - Secale-N7xN2-2004-5R (Break) locus 65.6 () Automated name-based View Maps
Wheat ABD - Wheat genes - Triticum-Genes-2B (Break) locus -33.3 () Automated name-based View Maps
Wheat D - T.tauschii, Appels - Tt-Appels-2D (Break) locus 11.95 () Automated name-based View Maps
Wheat ABD - Wheat genes - Triticum-Genes-5A (Break) locus 3.3 () Automated name-based View Maps
Wheat AB - T. turgidum, Messapia x dicoccoides, AFLP - Tturgidum-MxM-AFLP-5A (Break) locus 162 () Automated name-based View Maps
Wheat AB - T. turgidum, Messapia x dicoccoides, SSR - Tturgidum-SSR-4B (Break) locus 27.9 () Automated name-based View Maps
Rye - Rye, N7 x N6, 2004 - Secale-N7xN6-2004-4R (Break) locus 27.3 () Automated name-based View Maps
Wheat A - T. boeoticum x monococcum - T.b.xT.m.-2A (Break) locus 222 () Automated name-based View Maps
Wheat AB - T. turgidum, Omrabi5 x dicoccoides, QTL - Tt-Oxd-QTL-3A (Break) locus 25 () Automated name-based View Maps
Xpsr1196-3R locus 7.1 Rye - Rye, P87 x P105, 2004 - Secale-PxP-2004-3R Xpsr1196-3R locus 31 () Automated name-based View Maps
Rye - Rye, N6 x N2, 2004 - Secale-N6xN2-2004-3R Xpsr1196-3R locus 23.5 () Automated name-based View Maps
Rye - Rye, N7 x N2, 2004 - Secale-N7xN2-2004-3R Xpsr1196-3R locus 0 () Automated name-based View Maps
Xwg110a-3R locus 125.5 Rye - Rye, P87 x P105, 2004 - Secale-PxP-2004-3R Xwg110a-3R locus 47.5 () Automated name-based View Maps
Rye - Rye, N6 x N2, 2004 - Secale-N6xN2-2004-3R Xwg110a-3R locus 95.8 () Automated name-based View Maps
Rye - Rye, N7 x N2, 2004 - Secale-N7xN2-2004-3R Xwg110a-3R locus 84.2 () Automated name-based View Maps
Xmwg932-3R locus 136.9 Rye - Rye, P87 x P105, 2004 - Secale-PxP-2004-3R Xmwg932-3R locus 94.1 () Automated name-based View Maps
Rye - Rye, N7 x N2, 2004 - Secale-N7xN2-2004-3R Xmwg932-3R locus 98.6 () Automated name-based View Maps
Rye - Rye, N6 x N2, 2004 - Secale-N6xN2-2004-3R Xmwg932-3R locus 106.1 () Automated name-based View Maps
Xmwg2053a-3R locus 154.9 Rye - Rye, N7 x N2, 2004 - Secale-N7xN2-2004-3R Xmwg2053a-3R locus 112.7 () Automated name-based View Maps
Rye - Rye, N6 x N2, 2004 - Secale-N6xN2-2004-3R Xmwg2053a-3R locus 131.3 () Automated name-based View Maps
Rye - Rye, P87 x P105, 2004 - Secale-PxP-2004-3R Xmwg2053a-3R locus 120.3 () Automated name-based View Maps
Xpsr902-3R locus 93.1 Rye - Rye, N7 x N2, 2004 - Secale-N7xN2-2004-3R Xpsr902-3R locus 34.2 () Automated name-based View Maps
Rye - Rye, N6 x N2, 2004 - Secale-N6xN2-2004-3R Xpsr902-3R locus 47 () Automated name-based View Maps
Xpsr1077-3R locus 107 Rye - Rye, N6 x N2, 2004 - Secale-N6xN2-2004-3R Xpsr1077-3R locus 63.4 () Automated name-based View Maps
Xpsr899b-3R locus 78.4 Rye - Rye, N7 x N2, 2004 - Secale-N7xN2-2004-3R Xpsr899b-3R locus 11.3 () Automated name-based View Maps
Xpsr687c-3R locus 150.8 Rye - Rye, N7 x N2, 2004 - Secale-N7xN2-2004-3R Xpsr687c-3R locus 107.7 () Automated name-based View Maps
Xcmwg691a-3R locus 0 No other positions
Xgwm1059-3R locus 57.1 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.