*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Rye-Rye, P87 x P105
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Secale-PxP-1
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Rye - Rye, P87 x P105 [ View Map Set Info ]
Map Name: Secale-PxP-1
Map Start: 0.00
Map Stop: 122.40
Features by Type:
17 locus
17 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 17 of 17.
Rye - Rye, P87 x P105 - Secale-PxP-1
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xpsr162 locus 72.50 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1B Xpsr162 locus 67.00 () Automated name-based View Maps
Wheat ABD - Wheat, CS x CS-CNN DS1A - Ta-Dubcovsky-1A Xpsr162 locus 26.20 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1A Xpsr162 locus 77.00 () Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-1 Xpsr162 locus 71.10 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-1R Xpsr162 locus 81.40 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-1R Xpsr162 locus 5.20 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-1R Xpsr162 locus 70.20 () Automated name-based View Maps
Wheat ABD - Triticum, CS-G1777 DS1A^m^(1A) RSL - TmTa-Dubcovsky-1A Xpsr162 locus 36.20 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-1R Xpsr162 locus 90.40 () Automated name-based View Maps
Barley - H. bulbosum, PB1 x PB11 - Hbulbosum-PB1xPB11-1 Xpsr162 locus 41.00 () Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-1H Xpsr162 locus 60.50 () Automated name-based View Maps
Xpsr601 locus 53.70 Rye - Rye, P87 x P105, update - Secale-PxP-update-1R Xpsr601 locus 65.20 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-1R Xpsr601 locus 0.90 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-1R Xpsr601 locus 34.40 () Automated name-based View Maps
Rye - Rye, ExR - Secale-ExR-1 Xpsr601 locus 11.10 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-1ABD Xpsr601 locus 45.00 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-1R Xpsr601 locus 76.50 () Automated name-based View Maps
Xcdo580 locus 35.80 Diploid oat - Diploid Oat, AFLP - Avena-Yu-A Xcdo580 locus 428.50 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1A Xcdo580 locus 43.00 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-1R Xcdo580 locus 15.80 () Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-1 Xcdo580 locus 12.70 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_4-12 Xcdo580 locus 40.00 (cM) Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-4 Xcdo580 locus 48.00 () Automated name-based View Maps
Wheat A - 1AS, T.m. G1777 x G2528 - 1AS, T.m. G1777 x G2528 Xcdo580 locus -3.40 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-1R Xcdo580 locus 48.00 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-4 Xcdo580 locus 39.30 () Automated name-based View Maps
Oat - Oat-1996-KxO - Oat-1996-KxO_4 Xcdo580 locus 39.30 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1D Xcdo580 locus 53.00 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-1ABD Xcdo580 locus -81.00 () Automated name-based, Automated name-based View Maps
Oat - Oat, KxO/QTL - Oat-KxO/Q-4 Xcdo580 locus 40.30 () Automated name-based View Maps
Wheat ABD - Triticum, CS-G1777 DS1A^m^(1A) RSL - TmTa-Dubcovsky-1A Xcdo580 locus -2.50 () Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-A Xcdo580 locus 47.00 () Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_11 Xcdo580 locus 0.00 (cM) Automated name-based View Maps
Wheat A - T. monococcum, G1777 x G2528 - Tm-Dubcovsky-1A Xcdo580 locus -4.10 () Automated name-based View Maps
Wheat ABD - Wheat, CS x CS-CNN DS1A - Ta-Dubcovsky-1A Xcdo580 locus -2.00 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-1D Xcdo580 locus -2.02 () Automated name-based, Automated name-based View Maps
Xmwg938 locus 0.00 Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-A Xmwg938 locus -3.00 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-1R Xmwg938 locus 2.10 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-7A Xmwg938 locus 183.00 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-1D Xmwg938 locus -2.59 () Automated name-based, Automated name-based View Maps
Xmwg2062a locus 1.30 Rye - Rye, P87 x P105, update - Secale-PxP-update-1R Xmwg2062a locus 1.30 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-1R Xmwg2062a locus 0.70 () Automated name-based View Maps
Xmwg837 locus 9.70 Rye - Rye, P87 x P105, update - Secale-PxP-update-1R Xmwg837 locus 9.40 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1D Xmwg837 locus 22.00 () Automated name-based View Maps
Xmwg913a locus 36.20 Barley - Barley genes - Hordeum-Genes-1H MWG913 locus 29.70 () Automated name-based View Maps
Barley - Barley, IxF - Hordeum-Graner2-1H MWG913 locus 34.60 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-1H MWG913 locus 2.30 () Automated name-based View Maps
Barley - Barley consensus 2 - Barley-Consensus2-1H MWG913 locus 65.80 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-1H MWG913 locus 55.00 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-1H MWG913 locus 58.20 () Automated name-based View Maps
Barley - Barley, physical - Hordeum-Physical-RFLP-1H MWG913 locus 49.30 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-1R Xmwg913a locus 44.90 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-1H MWG913 locus 57.78 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-1R Xmwg913a locus 48.00 () Automated name-based View Maps
Xmwg913b locus 46.50 Rye - Rye, P87 x P105, update - Secale-PxP-update-1R Xmwg913b locus 63.50 () Automated name-based View Maps
Xpsr634 locus 48.20 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1D Xpsr634 locus 67.00 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-1R Xpsr634 locus -2.10 () Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-1 Xpsr634 locus 0.00 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1A Xpsr634 locus 75.00 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-1R Xpsr634 locus 73.10 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-1R Xpsr634 locus 62.30 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-1R Xpsr634 locus 27.60 () Automated name-based View Maps
Xpsr937 locus 49.10 Rye - Rye, P87 x P105, update - Secale-PxP-update-1R Xpsr937 locus 60.60 () Automated name-based View Maps
Wheat ABD - Triticum, CS-G1777 DS1A^m^(1A) RSL - TmTa-Dubcovsky-1A Xpsr937 locus 0.00 () Automated name-based View Maps
Xiag79 locus 50.50 Rye - Rye, Hannover - Secale-Philipp-1R Xiag79 locus 47.90 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-1R Xiag79 locus 62.50 () Automated name-based View Maps
Xmwg506 locus 52.50 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-1H MWG506 locus 70.70 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-1H MWG506 locus 61.00 () Automated name-based View Maps
Barley - Barley genes - Hordeum-Genes-1H MWG506 locus 21.50 () Automated name-based View Maps
Barley - Barley consensus 2 - Barley-Consensus2-1H MWG506 locus 74.10 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-1H MWG506 locus 69.17 () Automated name-based View Maps
Barley - Barley, IxF - Hordeum-Graner2-1H MWG506 locus 50.50 () Automated name-based View Maps
Barley - Barley, physical - Hordeum-Physical-RFLP-1H MWG506 locus 64.90 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-1R Xmwg506 locus 65.20 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-1H MWG506 locus 10.00 () Automated name-based View Maps
Centromere-R1 locus 53.10 Rye - Rye, Hannover - Secale-Philipp-1R Centromere-R1 locus 42.00 () Automated name-based View Maps
Rye - Rye, Hannover - Secale-Wricke-1R Centromere-R1 locus 50.50 () Automated name-based View Maps
Xpsr78 locus 58.50 Barley - Barley, MxG - Hordeum-Laurie3-3H Xpsr78 locus 0.00 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-1R Xpsr78 locus 76.50 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-3R Xpsr78 locus 70.90 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-3R Xpsr78 locus 73.70 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-3A Xpsr78 locus 131.00 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-1R Xpsr78 locus 70.90 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-3R Xpsr78 locus 7.80 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-1R Xpsr78 locus 1.30 () Automated name-based View Maps
Xiag186 locus 91.90 Rye - Rye, Hannover - Secale-Wricke-B Xiag186 locus 13.60 () Automated name-based View Maps
Xiag111 locus 106.10 Rye - Rye_2009_consensus - Rye-2009-Consensus-1R Xiag111 locus 72.00 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-1R Xiag111 locus 128.80 () Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-3 Xiag111 locus 22.10 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-3R Xiag111 locus 22.10 () Automated name-based View Maps
Xmwg912 locus 122.40 Rye - Rye_2009_consensus - Rye-2009-Consensus-1R Xmwg912 locus 91.80 () Automated name-based View Maps
Wheat ABD - Wheat, CS x CS-CNN DS1A - Ta-Dubcovsky-1A Xmwg912 locus 87.90 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1A Xmwg912 locus 115.00 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-1R Xmwg912 locus 150.60 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.