*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Rye-Rye, P87 x P105
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Secale-PxP-3
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Rye - Rye, P87 x P105 [ View Map Set Info ]
Map Name: Secale-PxP-3
Map Start: 0
Map Stop: 51.4
Features by Type:
6 locus
6 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 6 of 6.
Rye - Rye, P87 x P105 - Secale-PxP-3
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xwg110B locus 51.4 Oat - Oat, KxO - Oat-KxO-3 Xwg110B locus 38.2 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_3-38 Xwg110B locus 137.5 (cM) Automated name-based View Maps
Oat - Oat-2002-KxO_Pal - Oat-2002-KxO-Pal_3 Xwg110B locus 76.9 (cM) Automated name-based View Maps
Oat - Oat-2004-OxM-QTL4 - Oat-2004-OxM-QTL4_18 Xwg110B locus 134.6 (cM) Automated name-based View Maps
Oat - Oat, KxO/QTL - Oat-KxO/Q-3 Xwg110B locus 38.2 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-3R Xwg110B locus 84.6 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_18 Xwg110B locus 121 (cM) Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-3 Xwg110B locus 34 () Automated name-based View Maps
Xscb33 locus 21.6 Rye - Rye, P87 x P105, update - Secale-PxP-update-3R Xscb33 locus 53.3 () Automated name-based View Maps
Xpsr1196 locus 0 Rye - Rye_2009_consensus - Rye-2009-Consensus-3R Xpsr1196 locus 63.5 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-3R Xpsr1196 locus -16.7 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-3R Xpsr1196 locus 31.2 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-3R Xpsr1196 locus 26.6 () Automated name-based View Maps
Xwg110a locus 15.2 Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_8 Xwg110a locus 19 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_22 Xwg110a locus 19 (cM) Automated name-based View Maps
Oat - Oat-2003-OxM-QTL1 - Oat-2003-OxM-QTL1_5 Xwg110a locus 19 (cM) Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-3R Xwg110a locus 48.2 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_15 Xwg110a locus 19 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_24-26-34 Xwg110a locus 128.5 (cM) Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-34 Xwg110a locus 6.7 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_8 Xwg110a locus 19 (cM) Automated name-based View Maps
Centromere-R3 locus 24.5 Rye - Rye, Hannover - Secale-Wricke-3R Centromere-R3 locus 12.3 () Automated name-based View Maps
Xpsr1077 locus 27.5 Rye - Rye, Ds2 x RxL10 - Secale-Devos-3R Xpsr1077 locus 5.1 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-3R Xpsr1077 locus 59 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-3R Xpsr1077 locus 68.3 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-3R Xpsr1077 locus 71.5 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.