*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Rye-Rye, P87 x P105
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Secale-PxP-4
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Rye - Rye, P87 x P105 [ View Map Set Info ]
Map Name: Secale-PxP-4
Map Start: 0
Map Stop: 163.7
Features by Type:
14 locus
14 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 14 of 14.
Rye - Rye, P87 x P105 - Secale-PxP-4
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xpsr119 locus 125.5 Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-7A Xpsr119 locus -72.3 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-4R Xpsr119 locus 103.7 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-4R Xpsr119 locus 106.3 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-4R Xpsr119 locus 37.7 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-7ABD Xpsr119 locus -95 () Automated name-based, Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-4R Xpsr119 locus 122.2 () Automated name-based View Maps
Wheat D - T.tauschii, Appels - Tt-Appels-7D Xpsr119 locus 1 () Automated name-based View Maps
Xpsr167 locus 163.7 Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_2 Xpsr167 locus 93 (cM) Automated name-based View Maps
Wheat D - T.tauschii, Appels - Tt-Appels-6D Xpsr167 locus 1.45 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-4R Xpsr167 locus 77.4 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-4R Xpsr167 locus 160.6 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-4R Xpsr167 locus 134.1 () Automated name-based View Maps
Rye - Rye, Hannover - Secale-Wricke-4R Xpsr167 locus 111.1 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-4R Xpsr167 locus 164.7 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-6A Xpsr167 locus -65.1 () Automated name-based View Maps
Oat - Oat-2007-OxT-PcQTL - Oat-2007-OxT_2 Xpsr167 locus 93.4 (cM) Automated name-based View Maps
Xpsr392 locus 132.5 Rye - Rye, Ds2 x RxL10 - Secale-Devos-4R Xpsr392 locus 46.1 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-4R Xpsr392 locus 128.8 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-7ABD Xpsr392 locus -95 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-4A Xpsr392 locus 129 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-4R Xpsr392 locus 108.7 () Automated name-based View Maps
Xpsr584 locus 55.2 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-4D Xpsr584 locus -1.91 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-4R Xpsr584 locus 62.6 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-4R Xpsr584 locus 53.4 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-4ABD Xpsr584 locus -61 () Automated name-based, Automated name-based View Maps
Rye - Rye, Hannover - Secale-Wricke-4R Xpsr584 locus 21.9 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-4R Xpsr584 locus 53.2 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-4R Xpsr584 locus 0 () Automated name-based View Maps
Xmwg634 locus 0 Barley - Barley, IxT/QTL - Hordeum-IxT/Q-4H Xmwg634 locus -58.3 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-4R Xmwg634 locus 1.1 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-4R Xmwg634 locus 2.2 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-4D Xmwg634 locus 38 () Automated name-based View Maps
Xpsr921 locus 1.4 Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-4A Xpsr921 locus -59.8 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-4R Xpsr921 locus 0 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-4R Xpsr921 locus 1.1 () Automated name-based View Maps
Xiag120 locus 51.4 Rye - Rye, Hannover - Secale-Wricke-3R Xiag120 locus 42.3 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-3R Xiag120 locus 60.2 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-4R Xiag120 locus 50.7 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-4R Xiag120 locus 50.5 () Automated name-based View Maps
Centromere-R4 locus 56.6 Rye - Rye, Hannover - Secale-Wricke-4R Centromere-R4 locus 23.6 () Automated name-based View Maps
Xpsr150 locus 57.9 Rye - Rye, P87 x P105, update - Secale-PxP-update-4R Xpsr150 locus 53.2 () Automated name-based View Maps
Barley - Barley, BxGP - Hordeum-Laurie1-2H Xpsr150 locus 9.4 () Automated name-based View Maps
Barley - Barley, CxHs - Hordeum-Laurie2-2H Xpsr150 locus 6.8 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-7R Xpsr150 locus 38.5 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-7R Xpsr150 locus 109.3 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5A Xpsr150 locus 29 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-4R Xpsr150 locus 53.2 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-7R Xpsr150 locus 52.9 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-7ABD Xpsr150 locus -41 () Automated name-based, Automated name-based View Maps
Xiag115 locus 61.4 Rye - Rye, P87 x P105, update - Secale-PxP-update-4R Xiag115 locus 55.1 () Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-4 Xiag115 locus 61 () Automated name-based View Maps
Rye - Rye, Hannover - Secale-Wricke-4R Xiag115 locus 27.9 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-4R Xiag115 locus 55 () Automated name-based View Maps
Xmwg530 locus 111.4 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-7H MWG530 locus 18.6 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-7H MWG530 locus 15.25 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-7H MWG530 locus -65.4 () Automated name-based View Maps
Barley - Barley, IxF - Hordeum-Graner2-7H MWG530 locus 21.8 () Automated name-based View Maps
Barley - Barley consensus 2 - Barley-Consensus2-7H MWG530 locus 12.4 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-7H MWG530 locus 2 () Automated name-based View Maps
Barley - Barley, VxHs - Hordeum-Graner1-7H MWG530 locus 33.5 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-4R Xmwg530 locus 107.5 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-7A Xmwg530 locus -54.9 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-4R Xmwg530 locus 93.6 () Automated name-based View Maps
Xmwg539 locus 120.5 Rye - Rye, P87 x P105, update - Secale-PxP-update-4R Xmwg539 locus 117.7 () Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-7H Xmwg539 locus 81.6 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-4R Xmwg539 locus 101.4 () Automated name-based View Maps
Xcmwg652 locus 143.9 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-6A Xcmwg652 locus 32 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-4R Xcmwg652 locus 116.7 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-4R Xcmwg652 locus 141.1 () Automated name-based View Maps
Xpsr899 locus 156.2 Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-4R Xpsr899 locus 163.8 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-6A Xpsr899 locus -62.8 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-4R Xpsr899 locus 156.3 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-4R Xpsr899 locus 127.1 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-4R Xpsr899 locus 81 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.