*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Rye-Rye, P87 x P105
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Secale-PxP-5
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Rye - Rye, P87 x P105 [ View Map Set Info ]
Map Name: Secale-PxP-5
Map Start: 0
Map Stop: 142.8
Features by Type:
25 locus
25 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 25.
Rye - Rye, P87 x P105 - Secale-PxP-5
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xwg114 locus 87.9 Rye - Rye_2009_consensus - Rye-2009-Consensus-5R Xwg114 locus 75.1 () Automated name-based View Maps
Wheat D - T.tauschii, Appels - Tt-Appels-4D Xwg114 locus 18 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-4D Xwg114 locus 4.94 () Automated name-based, Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-5A Xwg114 locus 101.8 () Automated name-based View Maps
Rye - Rye, ExR - Secale-ExR-5 Xwg114 locus 115.4 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xwg114 locus 93 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-4ABD Xwg114 locus 93 () Automated name-based, Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-5R Xwg114 locus 150.3 () Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-F Xwg114 locus 28.6 () Automated name-based View Maps
Xpsr360 locus 4 Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-5A Xpsr360 locus 0 () Automated name-based View Maps
Rye - Rye, Hannover - Secale-Wricke-5R Xpsr360 locus 0 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-5R Xpsr360 locus 1.9 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-5R Xpsr360 locus 53.8 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-5R Xpsr360 locus 0 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-5R Xpsr360 locus 56.1 () Automated name-based View Maps
Xpsr370 locus 78.6 Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-5R Xpsr370 locus 148 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-5R Xpsr370 locus 69.5 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5D Xpsr370 locus 5.14 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-5R Xpsr370 locus 93.9 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-5R Xpsr370 locus 137.7 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xpsr370 locus 84 () Automated name-based, Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-5A Xpsr370 locus 97 () Automated name-based View Maps
Xpsr911 locus 23 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5B Xpsr911 locus 63 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-5R Xpsr911 locus 30.5 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5A Xpsr911 locus 48 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-5R Xpsr911 locus 78.8 () Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-5H Xpsr911 locus 83.8 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-5R Xpsr911 locus 21.2 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-5R Xpsr911 locus 89.2 () Automated name-based View Maps
Xwg644 locus 46.7 Rye - Rye, P87 x P105, update - Secale-PxP-update-5R Xwg644 locus 102.7 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-5A Xwg644 locus 67.1 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-5R Xwg644 locus 39.7 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xwg644 locus 75 () Automated name-based, Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-5H Xwg644 locus 109.1 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5D Xwg644 locus 5.14 () Automated name-based, Automated name-based View Maps
Xpsr79 locus 59.3 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5D Xpsr79 locus 5.14 () Automated name-based, Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-5R Xpsr79 locus 50.4 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-5R Xpsr79 locus 117.5 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xpsr79 locus 81 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-5R Xpsr79 locus 77.6 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-5R Xpsr79 locus 133.3 () Automated name-based View Maps
Xscb35 locus 66.3 Rye - Rye, P87 x P105, update - Secale-PxP-update-5R Xscb35 locus 124.6 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-5R Xscb35 locus 56.1 () Automated name-based View Maps
XTria-5R locus 107.3 No other positions
Xpsr326 locus 0 Wheat A - 5AS, T.m. G3116 x DV92 - 5AS, T.m. G3116 x DV92 Xpsr326 locus 0 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-5R Xpsr326 locus 52.3 () Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_26 Xpsr326 locus 1.5 (cM) Automated name-based View Maps
Wheat ABD - 5DS, CS x RL5406 - 5DS, CS x RL5406 Xpsr326 locus 0 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-5A Xpsr326 locus 0 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-5R Xpsr326 locus 1.3 () Automated name-based View Maps
Centromere-R5 locus 0.5 Rye - Rye, Hannover - Secale-Wricke-5R Centromere-R5 locus 4.2 () Automated name-based View Maps
Xpsr120a locus 1.1 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5A Xpsr120a locus 54 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-5R Xpsr120a locus 53.6 () Automated name-based View Maps
Xpsr109b locus 2.3 Rye - Rye, P87 x P105, update - Secale-PxP-update-5R Xpsr109b locus 53.2 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-5R Xpsr109b locus 1.3 () Automated name-based View Maps
Xiag220 locus 7.3 Rye - Rye, Hannover - Secale-Philipp-1R Xiag220 locus 125.7 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-5R Xiag220 locus 55.7 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-5R Xiag220 locus 3.4 () Automated name-based View Maps
Xpsr120b locus 28.2 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5A Xpsr120b locus 55 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-5R Xpsr120b locus 83.9 () Automated name-based View Maps
Xmwg2062b locus 35 Rye - Rye, P87 x P105, update - Secale-PxP-update-5R Xmwg2062b locus 90.6 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-5R Xmwg2062b locus 29.1 () Automated name-based View Maps
Xiag170 locus 49.1 Rye - Rye_2009_consensus - Rye-2009-Consensus-5R Xiag170 locus 41.2 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-5R Xiag170 locus 105 () Automated name-based View Maps
Xmwg042 locus 83.6 Rye - Rye, P87 x P105, update - Secale-PxP-update-5R Xmwg042 locus 146.2 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-5R Xmwg042 locus 72.9 () Automated name-based View Maps
Xiag10 locus 85.3 Rye - Rye_2009_consensus - Rye-2009-Consensus-5R Xiag10 locus 72.3 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-5R Xiag10 locus 147.7 () Automated name-based View Maps
Xpsb43 locus 97.3 Rye - Rye_2009_consensus - Rye-2009-Consensus-5R Xpsb43 locus 83.5 () Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-4H Xpsb43 locus 72.2 () Automated name-based View Maps
Barley - H. bulbosum, PB1 x PB11 - Hbulbosum-PB1xPB11-4 Xpsb43 locus 75 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-5R Xpsb43 locus 159.9 () Automated name-based View Maps
Xbcd1302 locus 102.9 Rye - Rye, P87 x P105, update - Secale-PxP-update-5R Xbcd1302 locus 165.6 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-5A Xbcd1302 locus 116.2 () Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-G Xbcd1302 locus 75.6 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-5R Xbcd1302 locus 87.7 () Automated name-based View Maps
Xmwg2112 locus 108.9 Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 5A mwg2112 locus 88.2 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-5R Xmwg2112 locus 171.6 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-4H MWG2112 locus 120.5 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-4H MWG2112 locus 136 () Automated name-based View Maps
Barley - Barley consensus 2 - Barley-Consensus2-4H MWG2112 locus 127.6 () Automated name-based View Maps
Barley - Barley, IxF - Hordeum-Graner2-4H MWG2112 locus 135.2 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-5A Xmwg2112 locus 121.1 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-5R Xmwg2112 locus 93.4 () Automated name-based View Maps
Wheat ABD - Wheat, Yr Update, 2021 - Wheat_Yr_2021-5A mwg2112 locus 197.67 (cM) Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-4H MWG2112 locus 130.3 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-4H MWG2112 locus 79.6 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5A Xmwg2112 locus 104 () Automated name-based View Maps
Xwg199 locus 113.6 Rye - Rye_2009_consensus - Rye-2009-Consensus-5R Xwg199 locus 97.6 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-5A Xwg199 locus 122.5 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-5R Xwg199 locus 176.4 () Automated name-based View Maps
Hp locus 117.1 No other positions
Ddw1 locus 125.9 Rye - Rye_2009_consensus - Rye-2009-Consensus-5R Ddw1 locus 104.7 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-5R Ddw1 locus 188.7 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-5R Ddw1 locus 165 () Automated name-based View Maps
beta-amy-R1 locus 142.8 Rye - Rye, P87 x P105, update - Secale-PxP-update-5R beta-amy-R1 locus 205.6 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.