*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Rye-Rye, P87 x P105, 2004
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Secale-PxP-2004-4R
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Rye - Rye, P87 x P105, 2004 [ View Map Set Info ]
Map Name: Secale-PxP-2004-4R
Map Start: 0
Map Stop: 175.7
Features by Type:
17 locus
17 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 17 of 17.
Rye - Rye, P87 x P105, 2004 - Secale-PxP-2004-4R
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xpsr921-4R locus 0 Rye - Rye, N6 x N2, 2004 - Secale-N6xN2-2004-4R Xpsr921-4R locus 1.6 () Automated name-based View Maps
Rye - Rye, N7 x N2, 2004 - Secale-N7xN2-2004-4R Xpsr921-4R locus 0 () Automated name-based View Maps
Rye - Rye, N7 x N6, 2004 - Secale-N7xN6-2004-4R Xpsr921-4R locus 0 () Automated name-based View Maps
Xmwg77-4R locus 21.7 No other positions
Xiag120-4R locus 52.9 Rye - Rye, N6 x N2, 2004 - Secale-N6xN2-2004-4R Xiag120-4R locus 35 () Automated name-based View Maps
Rye - Rye, N7 x N6, 2004 - Secale-N7xN6-2004-4R Xiag120-4R locus 52.3 () Automated name-based View Maps
Rye - Rye, N7 x N2, 2004 - Secale-N7xN2-2004-4R Xiag120-4R locus 50 () Automated name-based View Maps
Xiag115-4R locus 60.4 No other positions
Xgwm1134-4R locus 69.1 No other positions
Xmwg89-4R locus 83.8 No other positions
Xrems1154-4R locus 100.7 No other positions
Xscb52-4R locus 112.9 No other positions
Xmwg539-4R locus 122.7 No other positions
Xpsr119-4R locus 127.5 No other positions
Xscb21-4R locus 135.9 Rye - Rye, N7 x N6, 2004 - Secale-N7xN6-2004-4R Xscb21-4R locus 126.4 () Automated name-based View Maps
Rye - Rye, N7 x N2, 2004 - Secale-N7xN2-2004-4R Xscb21-4R locus 139.8 () Automated name-based View Maps
Rye - Rye, N6 x N2, 2004 - Secale-N6xN2-2004-4R Xscb21-4R locus 113.8 () Automated name-based View Maps
Xcmwg652-4R locus 146.6 No other positions
Xgwm1255-4R locus 153.9 Rye - Rye, N6 x N2, 2004 - Secale-N6xN2-2004-4R Xgwm1255-4R locus 123.9 () Automated name-based View Maps
Xmwg2053b-4R locus 161.2 Rye - Rye, N6 x N2, 2004 - Secale-N6xN2-2004-4R Xmwg2053b-4R locus 127 () Automated name-based View Maps
Rye - Rye, N7 x N2, 2004 - Secale-N7xN2-2004-4R Xmwg2053b-4R locus 170 () Automated name-based View Maps
Rye - Rye, N7 x N6, 2004 - Secale-N7xN6-2004-4R Xmwg2053b-4R locus 153.9 () Automated name-based View Maps
Xpsr899-4R locus 165.4 Rye - Rye, N6 x N2, 2004 - Secale-N6xN2-2004-4R Xpsr899-4R locus 132.2 () Automated name-based View Maps
Rye - Rye, N7 x N6, 2004 - Secale-N7xN6-2004-4R Xpsr899-4R locus 156.2 () Automated name-based View Maps
Rye - Rye, N7 x N2, 2004 - Secale-N7xN2-2004-4R Xpsr899-4R locus 171.9 () Automated name-based View Maps
Xgwm313-4R locus 172.6 No other positions
Xpsr167-4R locus 175.7 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.