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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Rye-Rye, P87 x P105, update
(Reference Set)
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Maps Secale-PxP-update-1R
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
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Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Rye - Rye, P87 x P105, update [ View Map Set Info ]
Map Name: Secale-PxP-update-1R
Map Start: 0
Map Stop: 150.6
Features by Type:
39 locus
39 Total

Map Features

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Items 26 to 39 of 39.       Previous | of 2
Rye - Rye, P87 x P105, update - Secale-PxP-update-1R
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
XScm9 locus 57.7 Rye - Rye_2009_consensus - Rye-2009-Consensus-1R XScm9 locus 37.5 () Automated name-based View Maps
Xmsh2 locus 63 No other positions
Lap1 locus 67 No other positions
XScm39 locus 70.2 Rye - Rye_2009_consensus - Rye-2009-Consensus-1R XScm39 locus 37.5 () Automated name-based View Maps
Xmwg2077 locus 79.3 No other positions
XAWPc-A4 locus 82.5 No other positions
XAWPc-B4e locus 84.5 No other positions
Xiag186a locus 110.7 No other positions
XAWPc-AFLP327 locus 124.2 No other positions
Mdh locus 137 Rye - Rye_2009_consensus - Rye-2009-Consensus-1R Mdh locus 73 () Automated name-based View Maps
Rye - Rye, P87 x P105, 2004 - Secale-PxP-2004-1R Mdh locus 125.1 () Automated name-based View Maps
Xbm2 locus 62.3 Rye - Rye, Hannover - Secale-Wricke-1R Bm2 locus 54.2 () Automated name-based View Maps
Lr-c locus 63.2 No other positions
S locus 63.2 No other positions
Lr-g locus 100.4 No other positions

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