*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Rye-Rye, P87 x P105, update
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Secale-PxP-update-1R
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Rye - Rye, P87 x P105, update [ View Map Set Info ]
Map Name: Secale-PxP-update-1R
Map Start: 0
Map Stop: 150.6
Features by Type:
39 locus
39 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 39.       of 2 | Next
Rye - Rye, P87 x P105, update - Secale-PxP-update-1R
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Prx7 locus 60.6 Barley - Barley, VGxA - Hordeum-Giese1-3H Prx7 locus 1 () Automated name-based View Maps
Barley - Barley, VGxA - Hordeum-Giese1-2H Prx7 locus 79 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-1R Prx7 locus 37.5 () Automated name-based View Maps
Xpsr162 locus 90.4 Wheat ABD - Triticum, CS-G1777 DS1A^m^(1A) RSL - TmTa-Dubcovsky-1A Xpsr162 locus 36.2 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-1 Xpsr162 locus 72.5 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1A Xpsr162 locus 77 () Automated name-based View Maps
Barley - H. bulbosum, PB1 x PB11 - Hbulbosum-PB1xPB11-1 Xpsr162 locus 41 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-1R Xpsr162 locus 81.4 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1B Xpsr162 locus 67 () Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-1H Xpsr162 locus 60.5 () Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-1 Xpsr162 locus 71.1 () Automated name-based View Maps
Wheat ABD - Wheat, CS x CS-CNN DS1A - Ta-Dubcovsky-1A Xpsr162 locus 26.2 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-1R Xpsr162 locus 70.2 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-1R Xpsr162 locus 5.2 () Automated name-based View Maps
Xpsr601 locus 65.2 Rye - Rye, Ds2 x RxL10 - Secale-Devos-1R Xpsr601 locus 0.9 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-1R Xpsr601 locus 76.5 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-1ABD Xpsr601 locus 45 () Automated name-based, Automated name-based View Maps
Rye - Rye, ExR - Secale-ExR-1 Xpsr601 locus 11.1 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-1R Xpsr601 locus 34.4 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-1 Xpsr601 locus 53.7 () Automated name-based View Maps
Xcdo580 locus 48 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-4 Xcdo580 locus 48 () Automated name-based View Maps
Oat - Oat-1996-KxO - Oat-1996-KxO_4 Xcdo580 locus 39.3 (cM) Automated name-based View Maps
Wheat ABD - Wheat, CS x CS-CNN DS1A - Ta-Dubcovsky-1A Xcdo580 locus -2 () Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_11 Xcdo580 locus 0 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-1ABD Xcdo580 locus -81 () Automated name-based, Automated name-based View Maps
Oat - Oat, KxO/QTL - Oat-KxO/Q-4 Xcdo580 locus 40.3 () Automated name-based View Maps
Wheat A - 1AS, T.m. G1777 x G2528 - 1AS, T.m. G1777 x G2528 Xcdo580 locus -3.4 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_4-12 Xcdo580 locus 40 (cM) Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-1 Xcdo580 locus 12.7 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-1 Xcdo580 locus 35.8 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-1R Xcdo580 locus 15.8 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-4 Xcdo580 locus 39.3 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1D Xcdo580 locus 53 () Automated name-based View Maps
Wheat ABD - Triticum, CS-G1777 DS1A^m^(1A) RSL - TmTa-Dubcovsky-1A Xcdo580 locus -2.5 () Automated name-based View Maps
Wheat A - T. monococcum, G1777 x G2528 - Tm-Dubcovsky-1A Xcdo580 locus -4.1 () Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-A Xcdo580 locus 47 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1A Xcdo580 locus 43 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-1D Xcdo580 locus -2.02 () Automated name-based, Automated name-based View Maps
Diploid oat - Diploid Oat, AFLP - Avena-Yu-A Xcdo580 locus 428.5 () Automated name-based View Maps
XksuD14 locus 3.1 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-1D XksuD14 locus -2.59 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-1ABD XksuD14 locus -86 () Automated name-based, Automated name-based View Maps
Wheat A - T. monococcum, G1777 x G2528 - Tm-Dubcovsky-1A XksuD14 locus -45.6 () Automated name-based View Maps
Wheat A - 1AS, T.m. G1777 x G2528 - 1AS, T.m. G1777 x G2528 XksuD14 locus -44.9 () Automated name-based View Maps
Xmwg938 locus 2.1 Rye - Rye, P87 x P105 - Secale-PxP-1 Xmwg938 locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-7A Xmwg938 locus 183 () Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-A Xmwg938 locus -3 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-1D Xmwg938 locus -2.59 () Automated name-based, Automated name-based View Maps
Xwg876 locus 17.4 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-4D Xwg876 locus -2.13 () Automated name-based, Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-1R Xwg876 locus 5.9 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-4ABD Xwg876 locus -65 () Automated name-based, Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-4A Xwg876 locus -6.6 () Automated name-based View Maps
Xmwg2062a locus 1.3 Rye - Rye_2009_consensus - Rye-2009-Consensus-1R Xmwg2062a locus 0.7 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-1 Xmwg2062a locus 1.3 () Automated name-based View Maps
Xmwg837 locus 9.4 Rye - Rye, P87 x P105 - Secale-PxP-1 Xmwg837 locus 9.7 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1D Xmwg837 locus 22 () Automated name-based View Maps
Xmwg913a locus 48 Rye - Rye, P87 x P105 - Secale-PxP-1 Xmwg913a locus 36.2 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-1R Xmwg913a locus 44.9 () Automated name-based View Maps
Xmwg913b locus 63.5 Rye - Rye, P87 x P105 - Secale-PxP-1 Xmwg913b locus 46.5 () Automated name-based View Maps
Xpsr634 locus 62.3 Rye - Rye, Ds2 x RxL10 - Secale-Devos-1R Xpsr634 locus -2.1 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-1R Xpsr634 locus 27.6 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-1R Xpsr634 locus 73.1 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1D Xpsr634 locus 67 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-1 Xpsr634 locus 48.2 () Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-1 Xpsr634 locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1A Xpsr634 locus 75 () Automated name-based View Maps
Xpsr937 locus 60.6 Rye - Rye, P87 x P105 - Secale-PxP-1 Xpsr937 locus 49.1 () Automated name-based View Maps
Wheat ABD - Triticum, CS-G1777 DS1A^m^(1A) RSL - TmTa-Dubcovsky-1A Xpsr937 locus 0 () Automated name-based View Maps
Xiag79 locus 62.5 Rye - Rye, Hannover - Secale-Philipp-1R Xiag79 locus 47.9 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-1 Xiag79 locus 50.5 () Automated name-based View Maps
Xmwg506 locus 65.2 Rye - Rye, P87 x P105 - Secale-PxP-1 Xmwg506 locus 52.5 () Automated name-based View Maps
Xpsr78 locus 70.9 Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-1R Xpsr78 locus 76.5 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-3A Xpsr78 locus 131 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-1 Xpsr78 locus 58.5 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-3R Xpsr78 locus 70.9 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-3R Xpsr78 locus 7.8 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-3R Xpsr78 locus 73.7 () Automated name-based View Maps
Barley - Barley, MxG - Hordeum-Laurie3-3H Xpsr78 locus 0 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-1R Xpsr78 locus 1.3 () Automated name-based View Maps
Xiag111 locus 128.8 Rye - Rye, UC90 x E-line - Secale-UxE-3 Xiag111 locus 22.1 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-1R Xiag111 locus 72 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-3R Xiag111 locus 22.1 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-1 Xiag111 locus 106.1 () Automated name-based View Maps
Xmwg912 locus 150.6 Rye - Rye_2009_consensus - Rye-2009-Consensus-1R Xmwg912 locus 91.8 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1A Xmwg912 locus 115 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-1 Xmwg912 locus 122.4 () Automated name-based View Maps
Wheat ABD - Wheat, CS x CS-CNN DS1A - Ta-Dubcovsky-1A Xmwg912 locus 87.9 () Automated name-based View Maps
Centromere-1R locus 64.5 Rye - Rye, UC90 x E-line - Secale-UxE-1 Centromere-1R locus 39.2 - 48.5 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-1R Centromere-1R locus 76 () Automated name-based View Maps
PM locus 3.1 Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-1H PM locus 27.3 () Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-4H PM locus 30.8 () Automated name-based View Maps
Xlrk10 locus 0 No other positions
Xiag95 locus 0.7 Rye - Rye, Hannover - Secale-Philipp-1R Xiag95 locus 0 () Automated name-based View Maps
Rye - Rye, Hannover - Secale-Wricke-1R Xiag95 locus 0 () Automated name-based View Maps
Wheat ABD - T1BL-1RS, Helios x Helami-105 - T1BL-1RS, Helios x Helami-105 Xiag95 locus 4.6 () Automated name-based View Maps
Xscb241 locus 1.6 No other positions
Xscb258b locus 4.7 No other positions
Gpi-R1 locus 27.8 Rye - Rye_2009_consensus - Rye-2009-Consensus-1R Gpi-R1 locus 56.2 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.