*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat AB-T. turgidum, JK x Cham1, 2
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Tturgidum-JKxC2-5A
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Wheat AB - T. turgidum, JK x Cham1, 2 [ View Map Set Info ]
Map Name: Tturgidum-JKxC2-5A
Map Start: 0
Map Stop: 225.4
Features by Type:
19 locus
19 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 19 of 19.
Wheat AB - T. turgidum, JK x Cham1, 2 - Tturgidum-JKxC2-5A
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xbcd926-5A locus 22.1 Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-5A Xbcd926-5A locus 43.5 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, DR Genes - Ta-Synthetic/Opata-DR-5A Xbcd926-5A locus 31.2 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-5A Xbcd926-5A locus 69.7 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-5A Xbcd926-5A locus 35.4 () Automated name-based View Maps
Wheat AB - T. turgidum, JK x Cham1 - Tturgidum-JKxC-5A Xbcd926-5A locus 41.7 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, Group 5 - Ta-Physical-Sarma-5A Xbcd926-5A locus 0.28 () Automated name-based View Maps
Xcdo1090-5A locus 18.6 Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-5A Xcdo1090-5A locus 48 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-5A Xcdo1090-5A locus 74.1 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, DR Genes - Ta-Synthetic/Opata-DR-5A Xcdo1090-5A locus 33.7 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR 2 - Ta-Synthetic/Opata-SSR2-5A Xcdo1090-5A locus 85.2 () Automated name-based View Maps
Wheat AB - T. turgidum, JK x Cham1 - Tturgidum-JKxC-5A Xcdo1090-5A locus 38.1 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-5A Xcdo1090-5A locus 37.8 () Automated name-based View Maps
Xcdo57-5A locus 18.6 Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-5A Xcdo57-5A locus 61.7 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-5A Xcdo57-5A locus 67.9 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-5A Xcdo57-5A locus 30.2 () Automated name-based View Maps
Wheat AB - T. turgidum, JK x Cham1 - Tturgidum-JKxC-5A Xcdo57-5A locus 38.1 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-5A Xcdo57-5A locus 14.1 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-5A Xcdo57-5A locus 46.9 () Automated name-based View Maps
Xgwm126-5A locus 154.8 Wheat A - Wheat, 2013, Brittle culm - Wheat_Brittle_culm_2013-5A Xgwm126-5A locus 7.4 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-5A Xgwm126-5A locus 111.7 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-5A Xgwm126-5A locus 161.1 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-5A Xgwm126-5A locus 138.7 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-5A Xgwm126-5A locus 167 () Automated name-based View Maps
Wheat A - T. boeoticum x monococcum - T.b.xT.m.-5A Xgwm126-5A locus 207.4 () Automated name-based View Maps
Wheat AB - Durum wheat, Kofa x UC1113 - Kofa/UC1113-5A Xgwm126-5A locus 193.5 () Automated name-based View Maps
Wheat AB - T. turgidum, JK x Cham1 - Tturgidum-JKxC-5A Xgwm126-5A locus 142.7 () Automated name-based View Maps
Wheat AB - T. turgidum, Messapia x dicoccoides, SSR - Tturgidum-SSR-5A Xgwm126-5A locus 133.9 () Automated name-based View Maps
Xcdo465-5A locus 0 Wheat AB - T. turgidum, JK x Cham1 - Tturgidum-JKxC-5A Xcdo465-5A locus 0 () Automated name-based View Maps
Xgwm129-5A.1 locus 14.1 Wheat AB - T. turgidum, JK x Cham1 - Tturgidum-JKxC-5A Xgwm129-5A.1 locus 23.6 () Automated name-based View Maps
Xgwm129-5A.2 locus 12.2 Wheat AB - T. turgidum, JK x Cham1 - Tturgidum-JKxC-5A Xgwm129-5A.2 locus 28.1 () Automated name-based View Maps
Xcdo786-5A locus 18.6 Wheat ABD - 5AL, CS q deletions, physical - 5AL, q deletions Xcdo786-5A locus 51 () Automated name-based View Maps
Wheat AB - T. turgidum, JK x Cham1 - Tturgidum-JKxC-5A Xcdo786-5A locus 38.1 () Automated name-based View Maps
Xwg232-5A locus 30.2 Wheat ABD - Wheat, Physical, Group 5 - Ta-Physical-Sarma-5A Xwg232-5A locus 0.28 () Automated name-based View Maps
Wheat AB - T. turgidum, JK x Cham1 - Tturgidum-JKxC-5A Xwg232-5A locus 56.8 () Automated name-based View Maps
Xutv1435-5A locus 43.3 Wheat AB - T. turgidum, JK x Cham1 - Tturgidum-JKxC-5A Xutv1435-5A locus 79.7 () Automated name-based View Maps
XPaccMcat9-5A locus 128.7 Wheat AB - T. turgidum, JK x Cham1 - Tturgidum-JKxC-5A XPaccMcat9-5A locus 111.2 () Automated name-based View Maps
Xutv497-5A locus 140.9 Wheat AB - T. turgidum, JK x Cham1 - Tturgidum-JKxC-5A Xutv497-5A locus 120.6 () Automated name-based View Maps
XBM816474-5A locus 64.9 No other positions
XPaagMcga6-5A locus 94.9 No other positions
XPaccMcat6-5A locus 124.3 No other positions
Xutv1110-5A locus 171.2 No other positions
Xcdo1387-5A locus 186.9 No other positions
Xutv624-5A locus 203.6 No other positions
Xcdo678-5A locus 225.4 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.