*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat AB-T. turgidum, Omrabi5 x dicoccoides, QTL
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Tt-Oxd-QTL-1A
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Wheat AB - T. turgidum, Omrabi5 x dicoccoides, QTL [ View Map Set Info ]
Map Name: Tt-Oxd-QTL-1A
Map Start: 0
Map Stop: 147.8
Features by Type:
20 locus
20 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 20 of 20.
Wheat AB - T. turgidum, Omrabi5 x dicoccoides, QTL - Tt-Oxd-QTL-1A
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xgwm99-1A locus 120.2 Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-1A Xgwm99-1A locus 111 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-1A Xgwm99-1A locus 126 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_1A Xgwm99-1A locus 0.8 () Automated name-based View Maps
Wheat ABD - Wheat, Conan x Reeder - Conan/Reeder-1A Xgwm99-1A locus 187.31 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-1A Xgwm99-1A locus 153.1 () Automated name-based View Maps
Wheat AB - T. turgidum, Messapia x dicoccoides, SSR - Tturgidum-SSR-1A Xgwm99-1A locus 107.7 () Automated name-based View Maps
Wheat ABD - Wheat, Chinese Spring x SQ1 - CS/SQ1-1A Xgwm99-1A locus 129.5 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-1A Xgwm99-1A locus 139.8 () Automated name-based View Maps
Xgwm136-1A locus 29.4 Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_1A Xgwm136-1A locus -0.66 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-1A Xgwm136-1A locus 5.2 () Automated name-based View Maps
Wheat ABD - Wheat, USG3209 x Jaypee - USG3209/Jaypee-1A Xgwm136-1A locus 34.4 () Automated name-based View Maps
Wheat AB - T. turgidum, JK x Cham1 - Tturgidum-JKxC-1A Xgwm136-1A locus 88.1 () Automated name-based View Maps
Wheat AB - T. turgidum, JK x Cham1, 2 - Tturgidum-JKxC2-1A Xgwm136-1A locus 173.2 () Automated name-based View Maps
Wheat AB - T. turgidum, Messapia x dicoccoides, SSR - Tturgidum-SSR-1A Xgwm136-1A locus -58.6 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-1A Xgwm136-1A locus 11.6 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-1A Xgwm136-1A locus 3.9 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-1A Xgwm136-1A locus 5.7 () Automated name-based View Maps
Wheat A - T. boeoticum x monococcum - T.b.xT.m.-1A Xgwm136-1A locus 53.6 () Automated name-based View Maps
Wheat ABD - Wheat, Conan x Reeder - Conan/Reeder-1A Xgwm136-1A locus 13.24 () Automated name-based View Maps
Centromere-1A locus 78.2 Wheat AB - Durum wheat, Svevo x Ciccio - Svevo/Ciccio-1A Centromere-1A locus 93.3 () Automated name-based View Maps
Wheat AB - T. turgidum, Messapia x dicoccoides, AFLP - Tturgidum-MxM-AFLP-1A Centromere-1A locus 71.4 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-1A Centromere-1A locus 32.8 - 42.6 () Automated name-based View Maps
Wheat AB - T. turgidum, Messapia x dicoccoides - Tturgidum-MxM-1A Centromere-1A locus 0 () Automated name-based View Maps
Wheat AB - T. turgidum, JK x Cham1 - Tturgidum-JKxC-1A Centromere-1A locus 169.1 () Automated name-based View Maps
Wheat AB - T. turgidum, Messapia x dicoccoides, SSR - Tturgidum-SSR-1A Centromere-1A locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, R Genes - Ta-Physical-RGenes-1A Centromere-1A locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, DR Genes - Ta-Synthetic/Opata-DR-1A Centromere-1A locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR 2 - Ta-Synthetic/Opata-SSR2-1A Centromere-1A locus 53.8 () Automated name-based View Maps
Wheat ABD - Wheat, Forno x Oberkulmer - Triticum-FxO-1A Centromere-1A locus 89 () Automated name-based View Maps
Wheat ABD - Wheat, Arina x Forno - Triticum-AxF-1A Centromere-1A locus 60 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, gbx RFLP - Ta-Synthetic/Opata-gbx-1A Centromere-1A locus 51 () Automated name-based View Maps
Xgwm497-1A locus 113.8 Wheat AB - T. turgidum, Messapia x dicoccoides, SSR - Tturgidum-SSR-1A Xgwm497-1A locus 78.3 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-1A Xgwm497-1A locus 85.5 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_1A Xgwm497-1A locus 0.08 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-1A Xgwm497-1A locus 81.2 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-1A Xgwm497-1A locus 108.9 () Automated name-based View Maps
Wheat AB - Durum wheat, Kofa x UC1113 - Kofa/UC1113-1A Xgwm497-1A locus 118 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-1A Xgwm497-1A locus 86.8 () Automated name-based View Maps
XMcaaEaca290-1A locus 0 No other positions
ggli47/51-1A locus 17.8 No other positions
wgli20-1A locus 17.8 No other positions
LMWa-1A locus 18.7 No other positions
Xgwm33-1A.2 locus 24.4 No other positions
Xgwm33-1A.1 locus 24.9 No other positions
XMctcEact392-1A locus 43.3 No other positions
XMctgEaag205-1A locus 49.1 No other positions
XMcaaEaca340-1A locus 61.8 No other positions
XMctgEagc178-1A locus 68.2 No other positions
XMctaEacg369-1A locus 87.5 No other positions
XMctgEagc205-1A locus 99 No other positions
XMctgEagc290-1A locus 105.3 No other positions
XMctgEagc284-1A locus 125.4 No other positions
XMctcEact510-1A locus 142.3 No other positions
Xgwm264-1A locus 147.8 Wheat AB - T. turgidum, Omrabi5 x dicoccoides, QTL - Tt-Oxd-QTL-1B Xgwm264-1A locus 0 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.