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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Wheat D-T.tauschii, Appels
(Reference Set)
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Maps Tt-Appels-3D
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 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
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Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
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Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Wheat D - T.tauschii, Appels [ View Map Set Info ]
Map Name: Tt-Appels-3D
Map Start: 1
Map Stop: 18.25
Features by Type:
14 locus
14 Total

Map Features

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Items 1 to 14 of 14.
Wheat D - T.tauschii, Appels - Tt-Appels-3D
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Got3 locus 12.55 No other positions
XcsIH72 locus 14.25 No other positions
XcsIH97-d locus 9.6 No other positions
XcsIHA159-a locus 15.55 No other positions
XcsIHA159-b locus 12.55 No other positions
XcsIHA159-c locus 13.35 No other positions
XcsIHA258-1 locus 3.75 No other positions
XcsL17 locus 11.8 No other positions
XcsL98a locus 16.75 No other positions
XcsL98b locus 18.25 No other positions
XksuD19 locus 7.8 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-3ABD XksuD19 locus 89 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-3D XksuD19 locus 2.94 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-3D XksuD19 locus 95 () Automated name-based View Maps
Xpsr121d locus 1 No other positions
Xpsr156 locus 14.7 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-3B Xpsr156 locus 48 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-3A Xpsr156 locus 87 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-3R Xpsr156 locus 1.4 () Automated name-based View Maps
Rye - Rye, ExR - Secale-ExR-3 Xpsr156 locus 89.9 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-3D Xpsr156 locus 2.94 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-3R Xpsr156 locus 64.2 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-3R Xpsr156 locus 90.4 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-3ABD Xpsr156 locus 35 () Automated name-based, Automated name-based View Maps
Xtam57 locus 12.55 No other positions

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