*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat ABD-Wheat-2018-NAM11-Berkut-x-CItr4175
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Wheat-2018-NAM11-BxCItr4175_1D
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Wheat ABD - Wheat-2018-NAM11-Berkut-x-CItr4175 [ View Map Set Info ]
Map Name: Wheat-2018-NAM11-BxCItr4175_1D
Map Start: 0
Map Stop: 99.6
Features by Type:
835 locus
835 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 835.       of 34 | Next
Wheat ABD - Wheat-2018-NAM11-Berkut-x-CItr4175 - Wheat-2018-NAM11-BxCItr4175_1D
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
D_contig10739_363 locus 0 Wheat ABD - Wheat-2018-NAM26-Berkut-x-PI185715 - Wheat-2018-NAM26-BxPI185715_1D D_contig10739_363 locus 3.9 () Automated name-based View Maps
Wheat ABD - Wheat_2014_90KSNP - Wheat_2014_90KSNP_1D IWB15585 locus 5.52 () Automated name-based View Maps
BS00100774_51 locus 0 Wheat ABD - Wheat_2014_90KSNP - Wheat_2014_90KSNP_1A IWB12147 locus 13.73 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM17-Berkut-x-PI82469 - Wheat-2018-NAM17-BxPI82469_1A BS00100774_51 locus 2.9 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM30-Berkut-x-PI278297 - Wheat-2018-NAM30-BxPI278297_1A BS00100774_51 locus 6.7 () Automated name-based View Maps
IAAV1194 locus 0 Wheat ABD - Wheat_2014_90KSNP - Wheat_2014_90KSNP_1D IWB34338 locus 5.32 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM19-Berkut-x-PI43355 - Wheat-2018-NAM19-BxPI43355_1D IAAV1194 locus 0 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM16-Berkut-x-PI8813 - Wheat-2018-NAM16-BxPI8813_1B IAAV1194 locus 6.9 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM6-Berkut-x-PI470817 - Wheat-2018-NAM6-BxPI470817_1B IAAV1194 locus 38.9 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM3-Berkut-x-PI283147 - Wheat-2018-NAM3-BxPI283147_1D IAAV1194 locus 0 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM18-Berkut-x-CItr15144 - Wheat-2018-NAM18-BxCItr15144_1A IAAV1194 locus 0 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM10-Berkut-x-PI9791 - Wheat-2018-NAM10-BxPI9791_1D IAAV1194 locus 0 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM20-Berkut-x-PI94567 - Wheat-2018-NAM20-BxPI94567_1D IAAV1194 locus 0 () Automated name-based View Maps
BS00104366_51 locus 0 Wheat ABD - Wheat-2018-NAM30-Berkut-x-PI278297 - Wheat-2018-NAM30-BxPI278297_6A BS00104366_51 locus 24.3 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM17-Berkut-x-PI82469 - Wheat-2018-NAM17-BxPI82469_6A BS00104366_51 locus 18.3 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM12-Berkut-x-CItr11223 - Wheat-2018-NAM12-BxCItr11223_6A BS00104366_51 locus 131.9 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM3-Berkut-x-PI283147 - Wheat-2018-NAM3-BxPI283147_6A BS00104366_51 locus 86.8 () Automated name-based View Maps
Wheat ABD - Wheat_2014_90KSNP - Wheat_2014_90KSNP_6A IWB12224 locus 43.1 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM28-Berkut-x-PI210945 - Wheat-2018-NAM28-BxPI210945_6A BS00104366_51 locus 27.1 () Automated name-based View Maps
SpringWheatNAM_tag_344544-1D locus 0 No other positions
SpringWheatNAM_tag_260560-1D locus 0 No other positions
SpringWheatNAM_tag_261830-1D locus 0 Wheat ABD - Wheat-2018-NAM26-Berkut-x-PI185715 - Wheat-2018-NAM26-BxPI185715_1D SpringWheatNAM_tag_261830-1D locus 1.5 () Automated name-based View Maps
SpringWheatNAM_tag_259822-1D locus 0 Wheat ABD - Wheat-2018-NAM26-Berkut-x-PI185715 - Wheat-2018-NAM26-BxPI185715_1D SpringWheatNAM_tag_259822-1D locus 1.5 () Automated name-based View Maps
SpringWheatNAM_tag_6277-1D locus 0 Wheat ABD - Wheat-2018-NAM2-Berkut-x-PI572692 - Wheat-2018-NAM2-BxPI572692_1D SpringWheatNAM_tag_6277-1D locus 110.4 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM9-Berkut-x-Vida - Wheat-2018-NAM9-BxVida_1D SpringWheatNAM_tag_6277-1D locus 0.7 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM30-Berkut-x-PI278297 - Wheat-2018-NAM30-BxPI278297_1D SpringWheatNAM_tag_6277-1D locus 0 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM10-Berkut-x-PI9791 - Wheat-2018-NAM10-BxPI9791_1D SpringWheatNAM_tag_6277-1D locus 0 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM5-Berkut-x-PI382150 - Wheat-2018-NAM5-BxPI382150_1D SpringWheatNAM_tag_6277-1D locus 49.5 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM6-Berkut-x-PI470817 - Wheat-2018-NAM6-BxPI470817_1D SpringWheatNAM_tag_6277-1D locus 0 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM7-Berkut-x-PI565213 - Wheat-2018-NAM7-BxPI565213_1D SpringWheatNAM_tag_6277-1D locus 0.8 () Automated name-based View Maps
SpringWheatNAM_tag_251340-1D locus 0 Wheat ABD - Wheat-2018-NAM26-Berkut-x-PI185715 - Wheat-2018-NAM26-BxPI185715_1D SpringWheatNAM_tag_251340-1D locus 1.5 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM2-Berkut-x-PI572692 - Wheat-2018-NAM2-BxPI572692_1D SpringWheatNAM_tag_251340-1D locus 110.4 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM15-Berkut-x-CItr7635 - Wheat-2018-NAM15-BxCItr7635_1D SpringWheatNAM_tag_251340-1D locus 0 () Automated name-based View Maps
SpringWheatNAM_tag_76702-1D locus 0 No other positions
SpringWheatNAM_tag_247462-1D locus 0 Wheat ABD - Wheat-2018-NAM26-Berkut-x-PI185715 - Wheat-2018-NAM26-BxPI185715_1D SpringWheatNAM_tag_247462-1D locus 1.5 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM15-Berkut-x-CItr7635 - Wheat-2018-NAM15-BxCItr7635_1D SpringWheatNAM_tag_247462-1D locus 0 () Automated name-based View Maps
SpringWheatNAM_tag_247673-1D locus 0 Wheat ABD - Wheat-2018-NAM26-Berkut-x-PI185715 - Wheat-2018-NAM26-BxPI185715_1D SpringWheatNAM_tag_247673-1D locus 1.5 () Automated name-based View Maps
SpringWheatNAM_tag_259380-1D locus 0 No other positions
SpringWheatNAM_tag_132405-1D locus 0 No other positions
SpringWheatNAM_tag_260255-1D locus 0 No other positions
SpringWheatNAM_tag_261669-1D locus 0 No other positions
SpringWheatNAM_tag_344493-1D locus 0 No other positions
SpringWheatNAM_tag_247944-1D locus 0 Wheat ABD - Wheat-2018-NAM26-Berkut-x-PI185715 - Wheat-2018-NAM26-BxPI185715_1D SpringWheatNAM_tag_247944-1D locus 1.5 () Automated name-based View Maps
SpringWheatNAM_tag_260993-1D locus 0 No other positions
SpringWheatNAM_tag_247690-1D locus 0 Wheat ABD - Wheat-2018-NAM26-Berkut-x-PI185715 - Wheat-2018-NAM26-BxPI185715_1D SpringWheatNAM_tag_247690-1D locus 1.5 () Automated name-based View Maps
SpringWheatNAM_tag_261154-1D locus 0 Wheat ABD - Wheat-2018-NAM26-Berkut-x-PI185715 - Wheat-2018-NAM26-BxPI185715_1D SpringWheatNAM_tag_261154-1D locus 1.5 () Automated name-based View Maps
SpringWheatNAM_tag_247483-1D locus 0 Wheat ABD - Wheat-2018-NAM26-Berkut-x-PI185715 - Wheat-2018-NAM26-BxPI185715_1D SpringWheatNAM_tag_247483-1D locus 1.5 () Automated name-based View Maps
SpringWheatNAM_tag_247642-1D locus 0 Wheat ABD - Wheat-2018-NAM26-Berkut-x-PI185715 - Wheat-2018-NAM26-BxPI185715_1D SpringWheatNAM_tag_247642-1D locus 1.5 () Automated name-based View Maps
SpringWheatNAM_tag_251832-1D locus 0 Wheat ABD - Wheat-2018-NAM15-Berkut-x-CItr7635 - Wheat-2018-NAM15-BxCItr7635_1D SpringWheatNAM_tag_251832-1D locus 0 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM26-Berkut-x-PI185715 - Wheat-2018-NAM26-BxPI185715_1D SpringWheatNAM_tag_251832-1D locus 1.5 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.