*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat ABD-Wheat-2018-NAM12-Berkut-x-CItr11223
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Wheat-2018-NAM12-BxCItr11223_6D
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Wheat ABD - Wheat-2018-NAM12-Berkut-x-CItr11223 [ View Map Set Info ]
Map Name: Wheat-2018-NAM12-BxCItr11223_6D
Map Start: 0
Map Stop: 138.7
Features by Type:
581 locus
581 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 581.       of 24 | Next
Wheat ABD - Wheat-2018-NAM12-Berkut-x-CItr11223 - Wheat-2018-NAM12-BxCItr11223_6D
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
BS00075804_51 locus 0 Wheat ABD - Wheat-2018-NAM11-Berkut-x-CItr4175 - Wheat-2018-NAM11-BxCItr4175_6A BS00075804_51 locus 161.9 () Automated name-based View Maps
Wheat ABD - Wheat_2014_90KSNP - Wheat_2014_90KSNP_6A IWB10833.1 locus 140.87 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM30-Berkut-x-PI278297 - Wheat-2018-NAM30-BxPI278297_6A BS00075804_51 locus 171.3 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM19-Berkut-x-PI43355 - Wheat-2018-NAM19-BxPI43355_6D BS00075804_51 locus 5.1 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM23-Berkut-x-PI192001 - Wheat-2018-NAM23-BxPI192001_6D BS00075804_51 locus 120.9 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM25-Berkut-x-CItr15134 - Wheat-2018-NAM25-BxCItr15134_6A BS00075804_51 locus 161.2 () Automated name-based View Maps
SpringWheatNAM_tag_53597-6D locus 0 Wheat ABD - Wheat-2018-NAM6-Berkut-x-PI470817 - Wheat-2018-NAM6-BxPI470817_6D SpringWheatNAM_tag_53597-6D locus 156.5 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM10-Berkut-x-PI9791 - Wheat-2018-NAM10-BxPI9791_6D SpringWheatNAM_tag_53597-6D locus 66.6 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM19-Berkut-x-PI43355 - Wheat-2018-NAM19-BxPI43355_6D SpringWheatNAM_tag_53597-6D locus 5.1 () Automated name-based View Maps
SpringWheatNAM_tag_44692-6D locus 0 Wheat ABD - Wheat-2018-NAM19-Berkut-x-PI43355 - Wheat-2018-NAM19-BxPI43355_6D SpringWheatNAM_tag_44692-6D locus 5.1 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM10-Berkut-x-PI9791 - Wheat-2018-NAM10-BxPI9791_6D SpringWheatNAM_tag_44692-6D locus 66.6 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM23-Berkut-x-PI192001 - Wheat-2018-NAM23-BxPI192001_6D SpringWheatNAM_tag_44692-6D locus 120.9 () Automated name-based View Maps
BS00063485_51 locus 0 Wheat ABD - Wheat-2018-NAM19-Berkut-x-PI43355 - Wheat-2018-NAM19-BxPI43355_6D BS00063485_51 locus 5.1 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM17-Berkut-x-PI82469 - Wheat-2018-NAM17-BxPI82469_6A BS00063485_51 locus 136.4 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM30-Berkut-x-PI278297 - Wheat-2018-NAM30-BxPI278297_6A BS00063485_51 locus 171.3 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM16-Berkut-x-PI8813 - Wheat-2018-NAM16-BxPI8813_6A BS00063485_51 locus 157.8 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM8-Berkut-x-PBW343 - Wheat-2018-NAM8-BxPBW343_6A BS00063485_51 locus 161.7 () Automated name-based View Maps
Wheat ABD - Wheat_2014_90KSNP - Wheat_2014_90KSNP_6A IWB9067.1 locus 140.87 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM29-Berkut-x-PI220431 - Wheat-2018-NAM29-BxPI220431_6A BS00063485_51 locus 148 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM11-Berkut-x-CItr4175 - Wheat-2018-NAM11-BxCItr4175_6A BS00063485_51 locus 161.9 () Automated name-based View Maps
Excalibur_c63506_512 locus 0 Wheat ABD - Wheat-2018-NAM23-Berkut-x-PI192001 - Wheat-2018-NAM23-BxPI192001_6D Excalibur_c63506_512 locus 120.9 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM19-Berkut-x-PI43355 - Wheat-2018-NAM19-BxPI43355_6D Excalibur_c63506_512 locus 5.1 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM16-Berkut-x-PI8813 - Wheat-2018-NAM16-BxPI8813_6D Excalibur_c63506_512 locus 70.5 () Automated name-based View Maps
Wheat ABD - Wheat_2014_90KSNP - Wheat_2014_90KSNP_6D IWB28212 locus 153.08 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM10-Berkut-x-PI9791 - Wheat-2018-NAM10-BxPI9791_6D Excalibur_c63506_512 locus 66.6 () Automated name-based View Maps
RAC875_c484_601 locus 0 Wheat ABD - Wheat-2018-NAM6-Berkut-x-PI470817 - Wheat-2018-NAM6-BxPI470817_6D RAC875_c484_601 locus 155.8 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM16-Berkut-x-PI8813 - Wheat-2018-NAM16-BxPI8813_6D RAC875_c484_601 locus 70.5 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM10-Berkut-x-PI9791 - Wheat-2018-NAM10-BxPI9791_6D RAC875_c484_601 locus 66.6 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM19-Berkut-x-PI43355 - Wheat-2018-NAM19-BxPI43355_6D RAC875_c484_601 locus 5.1 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM23-Berkut-x-PI192001 - Wheat-2018-NAM23-BxPI192001_6D RAC875_c484_601 locus 120.9 () Automated name-based View Maps
Wheat ABD - Wheat_2014_90KSNP - Wheat_2014_90KSNP_6D IWB58435 locus 153.08 () Automated name-based View Maps
Excalibur_c2991_320 locus 0 Wheat ABD - Wheat-2018-NAM6-Berkut-x-PI470817 - Wheat-2018-NAM6-BxPI470817_6D Excalibur_c2991_320 locus 155.8 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM23-Berkut-x-PI192001 - Wheat-2018-NAM23-BxPI192001_6D Excalibur_c2991_320 locus 120.9 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM10-Berkut-x-PI9791 - Wheat-2018-NAM10-BxPI9791_6D Excalibur_c2991_320 locus 66.6 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM16-Berkut-x-PI8813 - Wheat-2018-NAM16-BxPI8813_6D Excalibur_c2991_320 locus 70.5 () Automated name-based View Maps
Wheat ABD - Wheat_2014_90KSNP - Wheat_2014_90KSNP_6D IWB24903 locus 152.74 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM9-Berkut-x-Vida - Wheat-2018-NAM9-BxVida_6D Excalibur_c2991_320 locus 162.4 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM19-Berkut-x-PI43355 - Wheat-2018-NAM19-BxPI43355_6D Excalibur_c2991_320 locus 5.1 () Automated name-based View Maps
Kukri_c76365_555 locus 0 Wheat ABD - Wheat-2018-NAM16-Berkut-x-PI8813 - Wheat-2018-NAM16-BxPI8813_6D Kukri_c76365_555 locus 70.5 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM10-Berkut-x-PI9791 - Wheat-2018-NAM10-BxPI9791_6D Kukri_c76365_555 locus 66.6 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM23-Berkut-x-PI192001 - Wheat-2018-NAM23-BxPI192001_6D Kukri_c76365_555 locus 120.9 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM19-Berkut-x-PI43355 - Wheat-2018-NAM19-BxPI43355_6D Kukri_c76365_555 locus 5.1 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM17-Berkut-x-PI82469 - Wheat-2018-NAM17-BxPI82469_6B Kukri_c76365_555 locus 140.7 () Automated name-based View Maps
Wheat ABD - Wheat_2014_90KSNP - Wheat_2014_90KSNP_6D IWB47679 locus 153.08 () Automated name-based View Maps
Kukri_rep_c107605_164 locus 0 Wheat ABD - Wheat_2014_90KSNP - Wheat_2014_90KSNP_6D IWB49280 locus 153.08 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM10-Berkut-x-PI9791 - Wheat-2018-NAM10-BxPI9791_6D Kukri_rep_c107605_164 locus 66.6 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM19-Berkut-x-PI43355 - Wheat-2018-NAM19-BxPI43355_6D Kukri_rep_c107605_164 locus 5.1 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM23-Berkut-x-PI192001 - Wheat-2018-NAM23-BxPI192001_6D Kukri_rep_c107605_164 locus 121.6 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM6-Berkut-x-PI470817 - Wheat-2018-NAM6-BxPI470817_6D Kukri_rep_c107605_164 locus 155.8 () Automated name-based View Maps
CAP7_c524_297 locus 0 Wheat ABD - Wheat-2018-NAM23-Berkut-x-PI192001 - Wheat-2018-NAM23-BxPI192001_6D CAP7_c524_297 locus 120.9 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM2-Berkut-x-PI572692 - Wheat-2018-NAM2-BxPI572692_6A CAP7_c524_297 locus 122.1 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM6-Berkut-x-PI470817 - Wheat-2018-NAM6-BxPI470817_6D CAP7_c524_297 locus 155.8 () Automated name-based View Maps
Wheat ABD - Wheat_2014_90KSNP - Wheat_2014_90KSNP_6B IWB14155.1 locus 118.99 () Automated name-based View Maps
CAP8_c2689_409 locus 0 Wheat ABD - Wheat_2014_90KSNP - Wheat_2014_90KSNP_6D IWB14636 locus 153.08 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM23-Berkut-x-PI192001 - Wheat-2018-NAM23-BxPI192001_6D CAP8_c2689_409 locus 121.6 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM10-Berkut-x-PI9791 - Wheat-2018-NAM10-BxPI9791_6D CAP8_c2689_409 locus 66.6 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM19-Berkut-x-PI43355 - Wheat-2018-NAM19-BxPI43355_6D CAP8_c2689_409 locus 5.1 () Automated name-based View Maps
wsnp_CAP7_c1735_859744 locus 0 Wheat ABD - Wheat-2018-NAM19-Berkut-x-PI43355 - Wheat-2018-NAM19-BxPI43355_6D wsnp_CAP7_c1735_859744 locus 5.1 () Automated name-based View Maps
Wheat ABD - Wheat_2014_90KSNP - Wheat_2014_90KSNP_6B IWA1046 locus 118.13 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM23-Berkut-x-PI192001 - Wheat-2018-NAM23-BxPI192001_6D wsnp_CAP7_c1735_859744 locus 120.9 () Automated name-based View Maps
wsnp_CAP7_c1735_859875 locus 0 Wheat ABD - Wheat-2018-NAM19-Berkut-x-PI43355 - Wheat-2018-NAM19-BxPI43355_6D wsnp_CAP7_c1735_859875 locus 5.1 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM23-Berkut-x-PI192001 - Wheat-2018-NAM23-BxPI192001_6D wsnp_CAP7_c1735_859875 locus 121.6 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM10-Berkut-x-PI9791 - Wheat-2018-NAM10-BxPI9791_6D wsnp_CAP7_c1735_859875 locus 66.6 () Automated name-based View Maps
Wheat ABD - Wheat_2014_90KSNP - Wheat_2014_90KSNP_6D IWA1047 locus 153.08 () Automated name-based View Maps
wsnp_CAP8_rep_c4586_2232878 locus 0 Wheat ABD - Wheat-2018-NAM10-Berkut-x-PI9791 - Wheat-2018-NAM10-BxPI9791_6D wsnp_CAP8_rep_c4586_2232878 locus 66.6 () Automated name-based View Maps
Wheat ABD - Wheat_2014_90KSNP - Wheat_2014_90KSNP_6D IWA1232 locus 153.08 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM19-Berkut-x-PI43355 - Wheat-2018-NAM19-BxPI43355_6D wsnp_CAP8_rep_c4586_2232878 locus 5.1 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM23-Berkut-x-PI192001 - Wheat-2018-NAM23-BxPI192001_6D wsnp_CAP8_rep_c4586_2232878 locus 121.6 () Automated name-based View Maps
D_contig19916_460 locus 0 Wheat ABD - Wheat-2018-NAM10-Berkut-x-PI9791 - Wheat-2018-NAM10-BxPI9791_6D D_contig19916_460 locus 66.6 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM6-Berkut-x-PI470817 - Wheat-2018-NAM6-BxPI470817_6D D_contig19916_460 locus 155.8 () Automated name-based View Maps
Wheat ABD - Wheat_2014_90KSNP - Wheat_2014_90KSNP_6A IWB15986 locus 159.97 () Automated name-based View Maps
wsnp_JG_c5646_2148382 locus 0 Wheat ABD - Wheat-2018-NAM6-Berkut-x-PI470817 - Wheat-2018-NAM6-BxPI470817_6D wsnp_JG_c5646_2148382 locus 155.8 () Automated name-based View Maps
Wheat ABD - Wheat_2014_90KSNP - Wheat_2014_90KSNP_6D IWA6361 locus 153.08 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM10-Berkut-x-PI9791 - Wheat-2018-NAM10-BxPI9791_6D wsnp_JG_c5646_2148382 locus 66.6 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM23-Berkut-x-PI192001 - Wheat-2018-NAM23-BxPI192001_6D wsnp_JG_c5646_2148382 locus 121.6 () Automated name-based View Maps
SpringWheatNAM_tag_325845-6D locus 0 Wheat ABD - Wheat-2018-NAM10-Berkut-x-PI9791 - Wheat-2018-NAM10-BxPI9791_6D SpringWheatNAM_tag_325845-6D locus 66.6 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM19-Berkut-x-PI43355 - Wheat-2018-NAM19-BxPI43355_6D SpringWheatNAM_tag_325845-6D locus 5.1 () Automated name-based View Maps
SpringWheatNAM_tag_137530-6D locus 0 No other positions
SpringWheatNAM_tag_41344-6D locus 0 Wheat ABD - Wheat-2018-NAM19-Berkut-x-PI43355 - Wheat-2018-NAM19-BxPI43355_6D SpringWheatNAM_tag_41344-6D locus 5.1 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM6-Berkut-x-PI470817 - Wheat-2018-NAM6-BxPI470817_6D SpringWheatNAM_tag_41344-6D locus 154.3 () Automated name-based View Maps
SpringWheatNAM_tag_248888-6D locus 0 Wheat ABD - Wheat-2018-NAM23-Berkut-x-PI192001 - Wheat-2018-NAM23-BxPI192001_6D SpringWheatNAM_tag_248888-6D locus 120.9 () Automated name-based View Maps
SpringWheatNAM_tag_52991-6D locus 0 Wheat ABD - Wheat-2018-NAM23-Berkut-x-PI192001 - Wheat-2018-NAM23-BxPI192001_6D SpringWheatNAM_tag_52991-6D locus 120.9 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM6-Berkut-x-PI470817 - Wheat-2018-NAM6-BxPI470817_6D SpringWheatNAM_tag_52991-6D locus 156.5 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM19-Berkut-x-PI43355 - Wheat-2018-NAM19-BxPI43355_6D SpringWheatNAM_tag_52991-6D locus 5.1 () Automated name-based View Maps
SpringWheatNAM_tag_137559-6D locus 0 No other positions
SpringWheatNAM_tag_97059-6D locus 0 Wheat ABD - Wheat-2018-NAM10-Berkut-x-PI9791 - Wheat-2018-NAM10-BxPI9791_6D SpringWheatNAM_tag_97059-6D locus 66.6 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM19-Berkut-x-PI43355 - Wheat-2018-NAM19-BxPI43355_6D SpringWheatNAM_tag_97059-6D locus 5.1 () Automated name-based View Maps
SpringWheatNAM_tag_264115-6D locus 0 Wheat ABD - Wheat-2018-NAM23-Berkut-x-PI192001 - Wheat-2018-NAM23-BxPI192001_6D SpringWheatNAM_tag_264115-6D locus 120.9 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM19-Berkut-x-PI43355 - Wheat-2018-NAM19-BxPI43355_6D SpringWheatNAM_tag_264115-6D locus 5.1 () Automated name-based View Maps
SpringWheatNAM_tag_2002-6D locus 0 Wheat ABD - Wheat-2018-NAM19-Berkut-x-PI43355 - Wheat-2018-NAM19-BxPI43355_6D SpringWheatNAM_tag_2002-6D locus 5.1 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM6-Berkut-x-PI470817 - Wheat-2018-NAM6-BxPI470817_6D SpringWheatNAM_tag_2002-6D locus 155.8 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM10-Berkut-x-PI9791 - Wheat-2018-NAM10-BxPI9791_6D SpringWheatNAM_tag_2002-6D locus 66.6 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.