*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat ABD-Wheat-2018-NAM25-Berkut-x-CItr15134
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Wheat-2018-NAM25-BxCItr15134_3B
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Wheat ABD - Wheat-2018-NAM25-Berkut-x-CItr15134 [ View Map Set Info ]
Map Name: Wheat-2018-NAM25-BxCItr15134_3B
Map Start: 0
Map Stop: 201.2
Features by Type:
2,652 locus
2,652 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 2,652.       of 107 | Next
Wheat ABD - Wheat-2018-NAM25-Berkut-x-CItr15134 - Wheat-2018-NAM25-BxCItr15134_3B
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
wsnp_Ex_c3005_5548573 locus 0 Wheat ABD - Wheat-2018-NAM30-Berkut-x-PI278297 - Wheat-2018-NAM30-BxPI278297_3B wsnp_Ex_c3005_5548573 locus 26.7 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM1-Berkut-x-DharwarDry - Wheat-2018-NAM1-BxDharwarDry_3B wsnp_Ex_c3005_5548573 locus 9.8 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM11-Berkut-x-CItr4175 - Wheat-2018-NAM11-BxCItr4175_3B wsnp_Ex_c3005_5548573 locus 18.2 () Automated name-based View Maps
SpringWheatNAM_tag_21189-3B locus 0 Wheat ABD - Wheat-2018-NAM28-Berkut-x-PI210945 - Wheat-2018-NAM28-BxPI210945_3B SpringWheatNAM_tag_21189-3B locus 23.6 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM30-Berkut-x-PI278297 - Wheat-2018-NAM30-BxPI278297_3B SpringWheatNAM_tag_21189-3B locus 21.8 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM29-Berkut-x-PI220431 - Wheat-2018-NAM29-BxPI220431_3B SpringWheatNAM_tag_21189-3B locus 12.5 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM11-Berkut-x-CItr4175 - Wheat-2018-NAM11-BxCItr4175_3B SpringWheatNAM_tag_21189-3B locus 17.5 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM12-Berkut-x-CItr11223 - Wheat-2018-NAM12-BxCItr11223_3B SpringWheatNAM_tag_21189-3B locus 16.5 () Automated name-based View Maps
Ku_c663_1896 locus 0 Wheat ABD - Wheat-2018-NAM11-Berkut-x-CItr4175 - Wheat-2018-NAM11-BxCItr4175_3B Ku_c663_1896 locus 18.2 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM1-Berkut-x-DharwarDry - Wheat-2018-NAM1-BxDharwarDry_3B Ku_c663_1896 locus 9.8 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM30-Berkut-x-PI278297 - Wheat-2018-NAM30-BxPI278297_3B Ku_c663_1896 locus 26.7 () Automated name-based View Maps
JD_c6012_1567 locus 0 Wheat ABD - Wheat-2018-NAM27-Berkut-x-PI192569 - Wheat-2018-NAM27-BxPI192569_3B JD_c6012_1567 locus 73.3 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM1-Berkut-x-DharwarDry - Wheat-2018-NAM1-BxDharwarDry_3B JD_c6012_1567 locus 9.8 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM30-Berkut-x-PI278297 - Wheat-2018-NAM30-BxPI278297_3B JD_c6012_1567 locus 26.7 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM11-Berkut-x-CItr4175 - Wheat-2018-NAM11-BxCItr4175_3B JD_c6012_1567 locus 18.2 () Automated name-based View Maps
wsnp_Ra_c18153_27161629 locus 0 Wheat ABD - Wheat-2018-NAM27-Berkut-x-PI192569 - Wheat-2018-NAM27-BxPI192569_3B wsnp_Ra_c18153_27161629 locus 73.3 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM1-Berkut-x-DharwarDry - Wheat-2018-NAM1-BxDharwarDry_3B wsnp_Ra_c18153_27161629 locus 9.8 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM30-Berkut-x-PI278297 - Wheat-2018-NAM30-BxPI278297_3B wsnp_Ra_c18153_27161629 locus 26.7 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM29-Berkut-x-PI220431 - Wheat-2018-NAM29-BxPI220431_3B wsnp_Ra_c18153_27161629 locus 12.5 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM11-Berkut-x-CItr4175 - Wheat-2018-NAM11-BxCItr4175_3B wsnp_Ra_c18153_27161629 locus 18.2 () Automated name-based View Maps
wsnp_Ku_c663_1368085 locus 0 Wheat ABD - Wheat-2018-NAM1-Berkut-x-DharwarDry - Wheat-2018-NAM1-BxDharwarDry_3B wsnp_Ku_c663_1368085 locus 9.8 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM30-Berkut-x-PI278297 - Wheat-2018-NAM30-BxPI278297_3B wsnp_Ku_c663_1368085 locus 26.7 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM29-Berkut-x-PI220431 - Wheat-2018-NAM29-BxPI220431_3B wsnp_Ku_c663_1368085 locus 12.5 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM11-Berkut-x-CItr4175 - Wheat-2018-NAM11-BxCItr4175_3B wsnp_Ku_c663_1368085 locus 18.2 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM27-Berkut-x-PI192569 - Wheat-2018-NAM27-BxPI192569_3B wsnp_Ku_c663_1368085 locus 73.3 () Automated name-based View Maps
RAC875_c36432_172 locus 0 Wheat ABD - Wheat-2018-NAM11-Berkut-x-CItr4175 - Wheat-2018-NAM11-BxCItr4175_3B RAC875_c36432_172 locus 18.9 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM27-Berkut-x-PI192569 - Wheat-2018-NAM27-BxPI192569_3B RAC875_c36432_172 locus 74.6 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM29-Berkut-x-PI220431 - Wheat-2018-NAM29-BxPI220431_3B RAC875_c36432_172 locus 16.3 () Automated name-based View Maps
BS00064177_51 locus 0 Wheat ABD - Wheat-2018-NAM10-Berkut-x-PI9791 - Wheat-2018-NAM10-BxPI9791_3B BS00064177_51 locus 24.2 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM29-Berkut-x-PI220431 - Wheat-2018-NAM29-BxPI220431_3B BS00064177_51 locus 12.5 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM11-Berkut-x-CItr4175 - Wheat-2018-NAM11-BxCItr4175_3B BS00064177_51 locus 18.2 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM27-Berkut-x-PI192569 - Wheat-2018-NAM27-BxPI192569_3B BS00064177_51 locus 73.3 () Automated name-based View Maps
RAC875_c36432_197 locus 0 Wheat ABD - Wheat-2018-NAM27-Berkut-x-PI192569 - Wheat-2018-NAM27-BxPI192569_3B RAC875_c36432_197 locus 74.6 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM29-Berkut-x-PI220431 - Wheat-2018-NAM29-BxPI220431_3B RAC875_c36432_197 locus 16.3 () Automated name-based View Maps
BS00064956_51 locus 0 Wheat ABD - Wheat-2018-NAM29-Berkut-x-PI220431 - Wheat-2018-NAM29-BxPI220431_3B BS00064956_51 locus 12.5 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM27-Berkut-x-PI192569 - Wheat-2018-NAM27-BxPI192569_3B BS00064956_51 locus 73.3 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM11-Berkut-x-CItr4175 - Wheat-2018-NAM11-BxCItr4175_3B BS00064956_51 locus 18.2 () Automated name-based View Maps
wsnp_Ex_c19993_29024127 locus 0 Wheat ABD - Wheat-2018-NAM29-Berkut-x-PI220431 - Wheat-2018-NAM29-BxPI220431_3B wsnp_Ex_c19993_29024127 locus 16.3 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM11-Berkut-x-CItr4175 - Wheat-2018-NAM11-BxCItr4175_3B wsnp_Ex_c19993_29024127 locus 19.6 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM27-Berkut-x-PI192569 - Wheat-2018-NAM27-BxPI192569_3B wsnp_Ex_c19993_29024127 locus 74.6 () Automated name-based View Maps
BobWhite_c25670_425 locus 0.7 Wheat ABD - Wheat-2018-NAM27-Berkut-x-PI192569 - Wheat-2018-NAM27-BxPI192569_3B BobWhite_c25670_425 locus 74.6 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM29-Berkut-x-PI220431 - Wheat-2018-NAM29-BxPI220431_3B BobWhite_c25670_425 locus 17 () Automated name-based View Maps
SpringWheatNAM_tag_63013-3B locus 0.7 Wheat ABD - Wheat-2018-NAM29-Berkut-x-PI220431 - Wheat-2018-NAM29-BxPI220431_3B SpringWheatNAM_tag_63013-3B locus 10.3 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM28-Berkut-x-PI210945 - Wheat-2018-NAM28-BxPI210945_3B SpringWheatNAM_tag_63013-3B locus 23.6 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM27-Berkut-x-PI192569 - Wheat-2018-NAM27-BxPI192569_3B SpringWheatNAM_tag_63013-3B locus 73.3 () Automated name-based View Maps
SpringWheatNAM_tag_64282-3B locus 0.7 Wheat ABD - Wheat-2018-NAM28-Berkut-x-PI210945 - Wheat-2018-NAM28-BxPI210945_3B SpringWheatNAM_tag_64282-3B locus 25.8 () Automated name-based View Maps
SpringWheatNAM_tag_180099-3B locus 0.7 Wheat ABD - Wheat-2018-NAM26-Berkut-x-PI185715 - Wheat-2018-NAM26-BxPI185715_3B SpringWheatNAM_tag_180099-3B locus 22.1 () Automated name-based View Maps
SpringWheatNAM_tag_180770-3B locus 0.7 No other positions
SpringWheatNAM_tag_15197-3B locus 0.7 Wheat ABD - Wheat-2018-NAM10-Berkut-x-PI9791 - Wheat-2018-NAM10-BxPI9791_3B SpringWheatNAM_tag_15197-3B locus 20.5 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM26-Berkut-x-PI185715 - Wheat-2018-NAM26-BxPI185715_3B SpringWheatNAM_tag_15197-3B locus 10.1 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM11-Berkut-x-CItr4175 - Wheat-2018-NAM11-BxCItr4175_3B SpringWheatNAM_tag_15197-3B locus 17.5 () Automated name-based View Maps
SpringWheatNAM_tag_25543-3B locus 0.7 Wheat ABD - Wheat-2018-NAM11-Berkut-x-CItr4175 - Wheat-2018-NAM11-BxCItr4175_3B SpringWheatNAM_tag_25543-3B locus 17.5 () Automated name-based View Maps
SpringWheatNAM_tag_181976-3B locus 0.7 No other positions
SpringWheatNAM_tag_5220-3B locus 0.7 Wheat ABD - Wheat-2018-NAM11-Berkut-x-CItr4175 - Wheat-2018-NAM11-BxCItr4175_3B SpringWheatNAM_tag_5220-3B locus 12 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM29-Berkut-x-PI220431 - Wheat-2018-NAM29-BxPI220431_3B SpringWheatNAM_tag_5220-3B locus 10.3 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM1-Berkut-x-DharwarDry - Wheat-2018-NAM1-BxDharwarDry_3B SpringWheatNAM_tag_5220-3B locus 2.7 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM10-Berkut-x-PI9791 - Wheat-2018-NAM10-BxPI9791_3B SpringWheatNAM_tag_5220-3B locus 19.1 () Automated name-based View Maps
SpringWheatNAM_tag_179762-3B locus 0.7 No other positions
SpringWheatNAM_tag_179819-3B locus 0.7 No other positions
SpringWheatNAM_tag_180061-3B locus 0.7 No other positions
SpringWheatNAM_tag_30027-3B locus 0.7 Wheat ABD - Wheat-2018-NAM11-Berkut-x-CItr4175 - Wheat-2018-NAM11-BxCItr4175_3B SpringWheatNAM_tag_30027-3B locus 17.5 () Automated name-based View Maps
SpringWheatNAM_tag_180620-3B locus 0.7 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.