*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat ABD-Wheat-2018-NAM9-Berkut-x-Vida
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Wheat-2018-NAM9-BxVida_2A
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Wheat ABD - Wheat-2018-NAM9-Berkut-x-Vida [ View Map Set Info ]
Map Name: Wheat-2018-NAM9-BxVida_2A
Map Start: 0
Map Stop: 177.3
Features by Type:
2,130 locus
2,130 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 2,130.       of 86 | Next
Wheat ABD - Wheat-2018-NAM9-Berkut-x-Vida - Wheat-2018-NAM9-BxVida_2A
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Tdurum_contig10785_1669 locus 0 Wheat ABD - Wheat_2014_90KSNP - Wheat_2014_90KSNP_2A IWB66736 locus 30.01 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM4-Berkut-x-PI366716 - Wheat-2018-NAM4-BxPI366716_2A Tdurum_contig10785_1669 locus 9.2 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM15-Berkut-x-CItr7635 - Wheat-2018-NAM15-BxCItr7635_2A Tdurum_contig10785_1669 locus 4.2 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM12-Berkut-x-CItr11223 - Wheat-2018-NAM12-BxCItr11223_2A Tdurum_contig10785_1669 locus 8.1 () Automated name-based View Maps
SpringWheatNAM_tag_244891-2A locus 0 No other positions
SpringWheatNAM_tag_73762-2A locus 0 Wheat ABD - Wheat-2018-NAM15-Berkut-x-CItr7635 - Wheat-2018-NAM15-BxCItr7635_2A SpringWheatNAM_tag_73762-2A locus 2.9 () Automated name-based View Maps
SpringWheatNAM_tag_43611-2A locus 0 Wheat ABD - Wheat-2018-NAM15-Berkut-x-CItr7635 - Wheat-2018-NAM15-BxCItr7635_2A SpringWheatNAM_tag_43611-2A locus 2.9 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM12-Berkut-x-CItr11223 - Wheat-2018-NAM12-BxCItr11223_2A SpringWheatNAM_tag_43611-2A locus 8.1 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM23-Berkut-x-PI192001 - Wheat-2018-NAM23-BxPI192001_2A SpringWheatNAM_tag_43611-2A locus 1.5 () Automated name-based View Maps
SpringWheatNAM_tag_50625-2A locus 0 Wheat ABD - Wheat-2018-NAM15-Berkut-x-CItr7635 - Wheat-2018-NAM15-BxCItr7635_2A SpringWheatNAM_tag_50625-2A locus 2.9 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM12-Berkut-x-CItr11223 - Wheat-2018-NAM12-BxCItr11223_2A SpringWheatNAM_tag_50625-2A locus 8.1 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM4-Berkut-x-PI366716 - Wheat-2018-NAM4-BxPI366716_2A SpringWheatNAM_tag_50625-2A locus 18.9 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM23-Berkut-x-PI192001 - Wheat-2018-NAM23-BxPI192001_2A SpringWheatNAM_tag_50625-2A locus 1.5 () Automated name-based View Maps
BS00111371_51 locus 0 No other positions
Ex_c6937_1992 locus 177.3 Wheat ABD - Wheat-2018-NAM2-Berkut-x-PI572692 - Wheat-2018-NAM2-BxPI572692_2A Ex_c6937_1992 locus 197.7 () Automated name-based View Maps
Wheat ABD - Wheat_2014_90KSNP - Wheat_2014_90KSNP_2A IWB21195 locus 156.09 () Automated name-based View Maps
wsnp_Ex_c63909_62932437 locus 177.3 Wheat ABD - Wheat_2014_90KSNP - Wheat_2014_90KSNP_2A IWA4491 locus 156.09 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM2-Berkut-x-PI572692 - Wheat-2018-NAM2-BxPI572692_2A wsnp_Ex_c63909_62932437 locus 198.4 () Automated name-based View Maps
wsnp_Ex_c63909_62932669 locus 177.3 Wheat ABD - Wheat-2018-NAM2-Berkut-x-PI572692 - Wheat-2018-NAM2-BxPI572692_2A wsnp_Ex_c63909_62932669 locus 198.4 () Automated name-based View Maps
wsnp_Ex_c63909_62932893 locus 177.3 Wheat ABD - Wheat_2014_90KSNP - Wheat_2014_90KSNP_2A IWA4493 locus 156.09 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM2-Berkut-x-PI572692 - Wheat-2018-NAM2-BxPI572692_2A wsnp_Ex_c63909_62932893 locus 197.7 () Automated name-based View Maps
Kukri_c81100_105 locus 177.3 Wheat ABD - Wheat-2018-NAM13-Berkut-x-PI262611 - Wheat-2018-NAM13-BxPI262611_2A Kukri_c81100_105 locus 148.2 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM3-Berkut-x-PI283147 - Wheat-2018-NAM3-BxPI283147_2A Kukri_c81100_105 locus 163 () Automated name-based View Maps
Wheat ABD - Wheat_2014_90KSNP - Wheat_2014_90KSNP_2A IWB47877 locus 156.09 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM2-Berkut-x-PI572692 - Wheat-2018-NAM2-BxPI572692_2A Kukri_c81100_105 locus 197.7 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM5-Berkut-x-PI382150 - Wheat-2018-NAM5-BxPI382150_2D Kukri_c81100_105 locus 90.2 () Automated name-based View Maps
SpringWheatNAM_tag_28493-2A locus 177.3 Wheat ABD - Wheat-2018-NAM18-Berkut-x-CItr15144 - Wheat-2018-NAM18-BxCItr15144_2A SpringWheatNAM_tag_28493-2A locus 0.7 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM27-Berkut-x-PI192569 - Wheat-2018-NAM27-BxPI192569_2A SpringWheatNAM_tag_28493-2A locus 257.9 () Automated name-based View Maps
SpringWheatNAM_tag_62816-2A locus 177.3 Wheat ABD - Wheat-2018-NAM13-Berkut-x-PI262611 - Wheat-2018-NAM13-BxPI262611_2A SpringWheatNAM_tag_62816-2A locus 148.2 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM4-Berkut-x-PI366716 - Wheat-2018-NAM4-BxPI366716_2A SpringWheatNAM_tag_62816-2A locus 233.3 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM3-Berkut-x-PI283147 - Wheat-2018-NAM3-BxPI283147_2A SpringWheatNAM_tag_62816-2A locus 162.3 () Automated name-based View Maps
SpringWheatNAM_tag_110193-2A locus 177.3 Wheat ABD - Wheat-2018-NAM28-Berkut-x-PI210945 - Wheat-2018-NAM28-BxPI210945_2A SpringWheatNAM_tag_110193-2A locus 157.6 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM13-Berkut-x-PI262611 - Wheat-2018-NAM13-BxPI262611_2A SpringWheatNAM_tag_110193-2A locus 148.9 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM3-Berkut-x-PI283147 - Wheat-2018-NAM3-BxPI283147_2A SpringWheatNAM_tag_110193-2A locus 163 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM4-Berkut-x-PI366716 - Wheat-2018-NAM4-BxPI366716_2A SpringWheatNAM_tag_110193-2A locus 233.3 () Automated name-based View Maps
SpringWheatNAM_tag_58419-2A locus 177.3 Wheat ABD - Wheat-2018-NAM13-Berkut-x-PI262611 - Wheat-2018-NAM13-BxPI262611_2A SpringWheatNAM_tag_58419-2A locus 148.2 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM3-Berkut-x-PI283147 - Wheat-2018-NAM3-BxPI283147_2A SpringWheatNAM_tag_58419-2A locus 163 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM16-Berkut-x-PI8813 - Wheat-2018-NAM16-BxPI8813_2A SpringWheatNAM_tag_58419-2A locus 181.3 () Automated name-based View Maps
Excalibur_c16232_615 locus 177.3 Wheat ABD - Wheat-2018-NAM13-Berkut-x-PI262611 - Wheat-2018-NAM13-BxPI262611_2A Excalibur_c16232_615 locus 148.9 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM14-Berkut-x-PI70613 - Wheat-2018-NAM14-BxPI70613_6A Excalibur_c16232_615 locus 27.7 () Automated name-based View Maps
RAC875_c1757_530 locus 176.6 Wheat ABD - Wheat_2014_90KSNP - Wheat_2014_90KSNP_2A IWB54502 locus 177.44 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM4-Berkut-x-PI366716 - Wheat-2018-NAM4-BxPI366716_2A RAC875_c1757_530 locus 229.3 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM5-Berkut-x-PI382150 - Wheat-2018-NAM5-BxPI382150_2A RAC875_c1757_530 locus 171.7 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM29-Berkut-x-PI220431 - Wheat-2018-NAM29-BxPI220431_2A RAC875_c1757_530 locus 151.6 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM20-Berkut-x-PI94567 - Wheat-2018-NAM20-BxPI94567_2A RAC875_c1757_530 locus 167.8 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM26-Berkut-x-PI185715 - Wheat-2018-NAM26-BxPI185715_2A RAC875_c1757_530 locus 187.5 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM2-Berkut-x-PI572692 - Wheat-2018-NAM2-BxPI572692_2A RAC875_c1757_530 locus 183.7 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM27-Berkut-x-PI192569 - Wheat-2018-NAM27-BxPI192569_2A RAC875_c1757_530 locus 204.7 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM14-Berkut-x-PI70613 - Wheat-2018-NAM14-BxPI70613_2A RAC875_c1757_530 locus 187.2 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM1-Berkut-x-DharwarDry - Wheat-2018-NAM1-BxDharwarDry_2A RAC875_c1757_530 locus 3.6 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM11-Berkut-x-CItr4175 - Wheat-2018-NAM11-BxCItr4175_2A RAC875_c1757_530 locus 210.3 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM24-Berkut-x-PI192147 - Wheat-2018-NAM24-BxPI192147_2A RAC875_c1757_530 locus 191.4 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM23-Berkut-x-PI192001 - Wheat-2018-NAM23-BxPI192001_2B RAC875_c1757_530 locus 162.2 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM8-Berkut-x-PBW343 - Wheat-2018-NAM8-BxPBW343_2A RAC875_c1757_530 locus 151.2 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM3-Berkut-x-PI283147 - Wheat-2018-NAM3-BxPI283147_2A RAC875_c1757_530 locus 160.2 () Automated name-based View Maps
SpringWheatNAM_tag_124111-2A locus 176.6 Wheat ABD - Wheat-2018-NAM3-Berkut-x-PI283147 - Wheat-2018-NAM3-BxPI283147_2A SpringWheatNAM_tag_124111-2A locus 158.8 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM5-Berkut-x-PI382150 - Wheat-2018-NAM5-BxPI382150_2A SpringWheatNAM_tag_124111-2A locus 171.7 () Automated name-based View Maps
SpringWheatNAM_tag_209931-2A locus 176.6 Wheat ABD - Wheat-2018-NAM5-Berkut-x-PI382150 - Wheat-2018-NAM5-BxPI382150_2A SpringWheatNAM_tag_209931-2A locus 171.7 () Automated name-based View Maps
RAC875_c1757_1300 locus 176.6 Wheat ABD - Wheat-2018-NAM26-Berkut-x-PI185715 - Wheat-2018-NAM26-BxPI185715_2A RAC875_c1757_1300 locus 187.5 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM1-Berkut-x-DharwarDry - Wheat-2018-NAM1-BxDharwarDry_2A RAC875_c1757_1300 locus 3.6 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM19-Berkut-x-PI43355 - Wheat-2018-NAM19-BxPI43355_2A RAC875_c1757_1300 locus 162.3 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM4-Berkut-x-PI366716 - Wheat-2018-NAM4-BxPI366716_2A RAC875_c1757_1300 locus 229.3 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM30-Berkut-x-PI278297 - Wheat-2018-NAM30-BxPI278297_2A RAC875_c1757_1300 locus 225.5 () Automated name-based View Maps
Wheat ABD - Wheat_2014_90KSNP - Wheat_2014_90KSNP_2A IWB54501 locus 183.77 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM2-Berkut-x-PI572692 - Wheat-2018-NAM2-BxPI572692_2A RAC875_c1757_1300 locus 184.4 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM3-Berkut-x-PI283147 - Wheat-2018-NAM3-BxPI283147_2A RAC875_c1757_1300 locus 160.2 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM24-Berkut-x-PI192147 - Wheat-2018-NAM24-BxPI192147_2A RAC875_c1757_1300 locus 191.4 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM5-Berkut-x-PI382150 - Wheat-2018-NAM5-BxPI382150_2A RAC875_c1757_1300 locus 171.7 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM20-Berkut-x-PI94567 - Wheat-2018-NAM20-BxPI94567_2A RAC875_c1757_1300 locus 167.8 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM11-Berkut-x-CItr4175 - Wheat-2018-NAM11-BxCItr4175_2A RAC875_c1757_1300 locus 210.3 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM14-Berkut-x-PI70613 - Wheat-2018-NAM14-BxPI70613_2A RAC875_c1757_1300 locus 187.2 () Automated name-based View Maps
Kukri_c52608_142 locus 175.9 Wheat ABD - Wheat-2018-NAM6-Berkut-x-PI470817 - Wheat-2018-NAM6-BxPI470817_2A Kukri_c52608_142 locus 215 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM24-Berkut-x-PI192147 - Wheat-2018-NAM24-BxPI192147_2A Kukri_c52608_142 locus 194.3 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM1-Berkut-x-DharwarDry - Wheat-2018-NAM1-BxDharwarDry_2A Kukri_c52608_142 locus 0 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM30-Berkut-x-PI278297 - Wheat-2018-NAM30-BxPI278297_2D Kukri_c52608_142 locus 105.6 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM2-Berkut-x-PI572692 - Wheat-2018-NAM2-BxPI572692_2A Kukri_c52608_142 locus 186.5 () Automated name-based View Maps
Wheat ABD - Wheat_2014_90KSNP - Wheat_2014_90KSNP_2A IWB46267.1 locus 162.89 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM19-Berkut-x-PI43355 - Wheat-2018-NAM19-BxPI43355_2A Kukri_c52608_142 locus 169.3 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM4-Berkut-x-PI366716 - Wheat-2018-NAM4-BxPI366716_2A Kukri_c52608_142 locus 233.3 () Automated name-based View Maps
BS00066925_51 locus 175.9 Wheat ABD - Wheat-2018-NAM24-Berkut-x-PI192147 - Wheat-2018-NAM24-BxPI192147_2A BS00066925_51 locus 194.3 () Automated name-based View Maps
BobWhite_c10290_234 locus 175.9 Wheat ABD - Wheat-2018-NAM11-Berkut-x-CItr4175 - Wheat-2018-NAM11-BxCItr4175_2A BobWhite_c10290_234 locus 216.5 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM1-Berkut-x-DharwarDry - Wheat-2018-NAM1-BxDharwarDry_2A BobWhite_c10290_234 locus 0 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM19-Berkut-x-PI43355 - Wheat-2018-NAM19-BxPI43355_2A BobWhite_c10290_234 locus 169.3 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM6-Berkut-x-PI470817 - Wheat-2018-NAM6-BxPI470817_2A BobWhite_c10290_234 locus 215 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM2-Berkut-x-PI572692 - Wheat-2018-NAM2-BxPI572692_2A BobWhite_c10290_234 locus 186.5 () Automated name-based View Maps
Wheat ABD - Wheat_2014_90KSNP - Wheat_2014_90KSNP_2A IWB42.1 locus 154.76 () Automated name-based View Maps
Tdurum_contig70471_308 locus 175.9 Wheat ABD - Wheat-2018-NAM5-Berkut-x-PI382150 - Wheat-2018-NAM5-BxPI382150_2D Tdurum_contig70471_308 locus 86.7 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM16-Berkut-x-PI8813 - Wheat-2018-NAM16-BxPI8813_2A Tdurum_contig70471_308 locus 181.3 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM19-Berkut-x-PI43355 - Wheat-2018-NAM19-BxPI43355_2A Tdurum_contig70471_308 locus 169.3 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM24-Berkut-x-PI192147 - Wheat-2018-NAM24-BxPI192147_2A Tdurum_contig70471_308 locus 194.3 () Automated name-based View Maps
Wheat ABD - Wheat_2014_90KSNP - Wheat_2014_90KSNP_2Dx IWB73171 locus 98.59 () Automated name-based View Maps
Excalibur_c49266_154 locus 175.9 Wheat ABD - Wheat-2018-NAM30-Berkut-x-PI278297 - Wheat-2018-NAM30-BxPI278297_2D Excalibur_c49266_154 locus 105.6 () Automated name-based View Maps
Wheat ABD - Wheat_2014_90KSNP - Wheat_2014_90KSNP_2A IWB27034.1 locus 183.77 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM19-Berkut-x-PI43355 - Wheat-2018-NAM19-BxPI43355_2A Excalibur_c49266_154 locus 169.3 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM2-Berkut-x-PI572692 - Wheat-2018-NAM2-BxPI572692_2A Excalibur_c49266_154 locus 186.5 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM5-Berkut-x-PI382150 - Wheat-2018-NAM5-BxPI382150_2D Excalibur_c49266_154 locus 86.7 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.