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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat ABD-Wheat, CIMMYT Integrated
(Reference Set)
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Correspondences
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Maps CIMMYT-integrated-2A
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Wheat ABD - Wheat, CIMMYT Integrated [ View Map Set Info ]
Map Name: CIMMYT-integrated-2A
Map Start: 0
Map Stop: 84.56
Features by Type:
21 locus
21 Total

Map Features

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Items 1 to 21 of 21.
Wheat ABD - Wheat, CIMMYT Integrated - CIMMYT-integrated-2A
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
wPt9624 locus 0 No other positions
wPt7626 locus 0.14 Wheat ABD - Wheat, Conan x Reeder - Conan/Reeder-2A XwPt7626-2A locus 79.18 () Automated name-based View Maps
wPt0003 locus 6.07 Wheat ABD - Wheat, Conan x Reeder - Conan/Reeder-2A XwPt0003-2A locus 86.77 () Automated name-based View Maps
wPt7901 locus 7.53 No other positions
wPt6687 locus 7.93 No other positions
wPt9793 locus 8.45 No other positions
wPt0071 locus 44.75 No other positions
wPt6148 locus 48.62 No other positions
wPt8328 locus 48.62 No other positions
wPt9277 locus 52.97 No other positions
wPt3896 locus 56.73 No other positions
wPt7285 locus 59.34 No other positions
wPt7306 locus 59.56 No other positions
wPt4201 locus 60.42 No other positions
wPt8243 locus 68.05 No other positions
wPt3114 locus 68.33 Wheat ABD - Wheat, Conan x Reeder - Conan/Reeder-2A XwPt3114-2A locus 314 () Automated name-based View Maps
wPt0921 locus 70.45 Wheat ABD - Wheat, USG3209 x Jaypee - USG3209/Jaypee-5B XwPt0921-5B locus 30.2 () Automated name-based View Maps
wPt5647 locus 76.66 No other positions
wPt7056 locus 80.77 No other positions
wPt2087 locus 82.79 No other positions
wPt7024 locus 84.56 No other positions

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