*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat ABD-Wheat, CIMMYT Integrated
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps CIMMYT-integrated-3B
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Wheat ABD - Wheat, CIMMYT Integrated [ View Map Set Info ]
Map Name: CIMMYT-integrated-3B
Map Start: 17.06
Map Stop: 137.60
Features by Type:
99 locus
99 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 99.       of 4 | Next
Wheat ABD - Wheat, CIMMYT Integrated - CIMMYT-integrated-3B
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
ksuG59 locus 55.79 Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-3H ksuG59 locus 69.97 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-3H ksuG59 locus 69.97 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-3H ksuG59 locus 18.70 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SNP - Hordeum-StMo-SNP-3H ksuG59 locus 71.06 () Automated name-based View Maps
Wheat ABD - 3B Physical - Physical-3B ksuG59 locus 58.56 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-3H ksuG59 locus 91.00 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-3 ksuG59 locus 69.97 () Automated name-based View Maps
cdo718 locus 58.39 Barley - Barley, BinMap 2005 - Hordeum-Bins-3H cdo718 locus 102.00 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 3B cdo718 locus 51.10 () Automated name-based View Maps
Rice - Rice, BxOl - Rice-CU-2 cdo718 locus 104.70 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-3H cdo718 locus 103.34 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-3H cdo718 locus 27.80 () Automated name-based View Maps
Wheat ABD - 3B Physical - Physical-3B cdo718 locus 68.30 () Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-3H cdo718 locus 62.30 () Automated name-based View Maps
Barley - Barley, CxH - Hordeum-CxH-3H cdo718 locus 71.30 () Automated name-based View Maps
Oat - Oat, MxN, genetic 2005 - Oat-MxN_2005-6 cdo718 locus 78.90 () Automated name-based View Maps
Maize - Maize, TxCM - Zea-Ahn-5 cdo718 locus 127.05 () Automated name-based View Maps
wPt7341 locus 17.06 No other positions
wPt8855 locus 17.06 No other positions
wpt7984 locus 17.99 No other positions
wPt7212 locus 23.22 Wheat ABD - Wheat, USG3209 x Jaypee - USG3209/Jaypee-5A XwPt7212-5A locus 0.00 () Automated name-based View Maps
wPt4739 locus 33.53 No other positions
wPt0544 locus 42.87 No other positions
wPt9432 locus 44.03 No other positions
wPt0365 locus 44.03 Wheat ABD - Wheat, USG3209 x Jaypee - USG3209/Jaypee-3B XwPt0365-3B locus 110.80 () Automated name-based View Maps
wPt0995 locus 44.03 Wheat ABD - Wheat, USG3209 x Jaypee - USG3209/Jaypee-3B XwPt0995-3B locus 110.90 () Automated name-based View Maps
wPt8352 locus 44.03 Wheat ABD - Wheat, USG3209 x Jaypee - USG3209/Jaypee-3B XwPt8352-3B locus 110.80 () Automated name-based View Maps
wPt8983 locus 44.03 No other positions
wPt1822 locus 44.03 No other positions
wPt2403 locus 44.03 No other positions
wPt2748 locus 44.03 No other positions
wPt4370 locus 44.03 No other positions
wPt4576 locus 44.03 Wheat ABD - Wheat, USG3209 x Jaypee - USG3209/Jaypee-3B XwPt4576-3B locus 111.00 () Automated name-based View Maps
wPt7015 locus 44.03 No other positions
wPt7024e locus 44.03 No other positions
wPt7229 locus 44.03 No other positions
wPt7266 locus 44.03 No other positions
wPt7956 locus 44.03 No other positions
wPt7142 locus 44.03 No other positions
wPt5716 locus 44.03 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.