*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat ABD-Wheat, Chinese Spring x SQ1
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps CS/SQ1-1D
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Wheat ABD - Wheat, Chinese Spring x SQ1 [ View Map Set Info ]
Map Name: CS/SQ1-1D
Map Start: 0
Map Stop: 158
Features by Type:
12 locus
12 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 12 of 12.
Wheat ABD - Wheat, Chinese Spring x SQ1 - CS/SQ1-1D
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xbarc149-1D locus 0 Wheat ABD - Wheat_Consensus_2014_Ug99_Rust - Wheat_Consensus_2014_Ug99_Rust_1 barc149 locus 7.22 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_1D Xbarc149-1D locus -0.54 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 1D barc149 locus 3.7 () Automated name-based View Maps
Wheat ABD - Wheat-2014-Consensus-Ug99-Update - Wheat-2014-Consensus-Ug99-Update barc149 locus 7.22 () Automated name-based View Maps
Wheat ABD - Wheat, Yr Update, 2021 - Wheat_Yr_2021-1D barc149 locus 7.31 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-1D Xbarc149-1D locus 13.7 () Automated name-based View Maps
Xwmc432-1D locus 32.9 Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 1D wmc432 locus 8.5 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-1D Xwmc432-1D locus 22.5 () Automated name-based View Maps
Wheat ABD - Wheat, Yr Update, 2021 - Wheat_Yr_2021-1D wmc432 locus 16.83 (cM) Automated name-based View Maps
Xm60p64.7-1D locus 49.1 No other positions
Xm39p78.7-1D locus 57.2 No other positions
Xm83p65.3-1D locus 83.3 No other positions
Xcfd65a-1D locus 92.5 No other positions
Xwmc429-1D locus 93.8 Wheat ABD - Wheat, Yr Update, 2021 - Wheat_Yr_2021-1D wmc429 locus 61.8 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-1D Xwmc429-1D locus 52.7 () Automated name-based View Maps
Wheat ABD - Wheat-2014-Consensus-Ug99-Update - Wheat-2014-Consensus-Ug99-Update wmc429 locus 44.22 () Automated name-based View Maps
Wheat ABD - Wheat_Consensus_2014_Ug99_Rust - Wheat_Consensus_2014_Ug99_Rust_1 wmc429 locus 44.22 () Automated name-based View Maps
Wheat ABD - Wheat, Louise x Penawawa - Louise/Penawawa-1D Xwmc429-1D locus 41 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 1D wmc429 locus 31.1 () Automated name-based View Maps
GluD-1D locus 130.5 No other positions
Xgwm642-1D locus 137.3 Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-1D Xgwm642-1D locus 76.3 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-1D Xgwm642-1D locus 75.4 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_1D Xgwm642-1D locus 0.7 () Automated name-based View Maps
Wheat ABD - Wheat, Arina x Forno - Triticum-AxF-1D Xgwm642-1D locus 91.9 () Automated name-based View Maps
Wheat ABD - Wheat, P91193D1 x P92201D5 - P91193D1/P92201D5-1D Xgwm642-1D locus 70.1 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-1D Xgwm642-1D locus 104.1 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-1D Xgwm642-1D locus 125.15 () Automated name-based View Maps
Xwmc179.1-1D locus 139.8 No other positions
Xcfd27-1D locus 151.1 Wheat ABD - Wheat, Courtot x Chinese Spring, GPW - Ta-Courtot/CS-GPW-1D Xcfd27-1D locus 108.9 () Automated name-based View Maps
Wheat ABD - Wheat, Louise x Penawawa - Louise/Penawawa-1D Xcfd27-1D locus 6.5 () Automated name-based View Maps
Xm68p78.3-1D locus 158 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.