*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat ABD-Wheat, Chinese Spring x SQ1
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps CS/SQ1-2D
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Wheat ABD - Wheat, Chinese Spring x SQ1 [ View Map Set Info ]
Map Name: CS/SQ1-2D
Map Start: 0.00
Map Stop: 196.30
Features by Type:
25 locus
25 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 25.
Wheat ABD - Wheat, Chinese Spring x SQ1 - CS/SQ1-2D
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xbarc124a-2D locus 0.00 No other positions
Xcfd51a-2D locus 5.70 Wheat ABD - Wheat-2014-Consensus-Ug99-Update - Wheat-2014-Consensus-Ug99-Update cfd51 locus 2.00 () Automated name-based View Maps
Wheat ABD - Wheat_Consensus_2014_Ug99_Rust - Wheat_Consensus_2014_Ug99_Rust_2 cfd51 locus 2.00 () Automated name-based View Maps
Xwmc111-2D locus 10.20 Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-2D Xwmc111-2D locus 51.40 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-2D Xwmc111-2D locus 11.00 () Automated name-based View Maps
Xwmc25a-2D locus 14.70 No other positions
Xwmc503-2D locus 15.80 Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 2D wmc503 locus 2.60 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-2D Xwmc503-2D locus 20.50 () Automated name-based View Maps
Wheat ABD - Wheat-2014-Consensus-Ug99-Update - Wheat-2014-Consensus-Ug99-Update wmc503 locus 21.35 () Automated name-based View Maps
Wheat ABD - Wheat_Consensus_2014_Ug99_Rust - Wheat_Consensus_2014_Ug99_Rust_2 wmc503 locus 21.35 () Automated name-based View Maps
Wheat ABD - Wheat, USG3209 x Jaypee - USG3209/Jaypee-2D Xwmc503-2D locus 0.00 () Automated name-based View Maps
Xgwm261-2D locus 15.80 Wheat ABD - Wheat, Arina x Forno - Triticum-AxF-2D Xgwm261-2D locus 10.80 () Automated name-based View Maps
Wheat ABD - Wheat, Courtot x Chinese Spring, GPW - Ta-Courtot/CS-GPW-2D Xgwm261-2D locus 45.00 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-2D Xgwm261-2D locus 30.10 () Automated name-based View Maps
Wheat ABD - Wheat, P91193D1 x P92201D5 - P91193D1/P92201D5-2D Xgwm261-2D locus 33.60 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-2D Xgwm261-2D locus 23.20 () Automated name-based View Maps
Wheat ABD - Wheat, WxM, FHB QTL - Triticum-WxM-FHB-QTL-2D Xgwm261-2D locus 26.00 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-2D Xgwm261-2D locus 70.70 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_2D Xgwm261-2D locus -0.16 () Automated name-based View Maps
Xwmc112-2D locus 21.40 Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-2D Xwmc112-2D locus 28.00 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 2D wmc112 locus 5.40 () Automated name-based View Maps
Wheat ABD - Wheat, USG3209 x Jaypee - USG3209/Jaypee-2D Xwmc112-2D locus 5.50 () Automated name-based View Maps
Wheat ABD - Wheat 2008, Corrigin x CS(T2D), C gene - Wheat-2008-Corrigin-CS(T2D)-2D Xwmc112-2D locus 32.00 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-2D Xwmc112-2D locus 67.50 () Automated name-based View Maps
Wheat ABD - Wheat_Consensus_2014_Ug99_Rust - Wheat_Consensus_2014_Ug99_Rust_2 wmc112 locus 27.51 () Automated name-based View Maps
Xcfd53-2D locus 22.50 Wheat ABD - Wheat, Courtot x Chinese Spring, GPW - Ta-Courtot/CS-GPW-2D Xcfd53-2D locus 40.00 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_2D Xcfd53-2D locus -0.40 () Automated name-based View Maps
Wheat ABD - Wheat, USG3209 x Jaypee - USG3209/Jaypee-2D Xcfd53-2D locus 5.40 () Automated name-based View Maps
Wheat ABD - Wheat, Arina x Forno - Triticum-AxF-2D Xcfd53-2D locus 16.80 () Automated name-based View Maps
Xwmc453d-2D locus 88.90 No other positions
Xgwm102-2D locus 94.50 Wheat ABD - Wheat, Arina x Forno - Triticum-AxF-2D Xgwm102-2D locus 94.30 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-2D Xgwm102-2D locus 48.20 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-2D Xgwm102-2D locus 36.00 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_2D Xgwm102-2D locus -0.40 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-2D Xgwm102-2D locus 111.60 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-2D Xgwm102-2D locus 73.40 () Automated name-based View Maps
Wheat ABD - Wheat, USG3209 x Jaypee - USG3209/Jaypee-2D Xgwm102-2D locus 62.50 () Automated name-based View Maps
Xm72p78.4a-2D locus 95.90 No other positions
Xcfd11-2D locus 100.80 Wheat ABD - Wheat, Courtot x Chinese Spring, GPW - Ta-Courtot/CS-GPW-2D Xcfd11-2D locus 81.10 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_2D Xcfd11-2D locus -0.74 () Automated name-based View Maps
Wheat ABD - Wheat, Conan x Reeder - Conan/Reeder-2D Xcfd11-2D locus 38.70 () Automated name-based View Maps
Xwmc18-2D locus 116.20 Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-2D Xwmc18-2D locus 127.40 () Automated name-based View Maps
Wheat ABD - Wheat, Louise x Penawawa - Louise/Penawawa-2D Xwmc18-2D locus 51.90 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 2D wmc18 locus 34.20 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-2D Xwmc18-2D locus 63.70 () Automated name-based View Maps
Xgwm30.1-2D locus 122.10 No other positions
Xgwm539-2D locus 136.90 Wheat ABD - Wheat, Conan x Reeder - Conan/Reeder-2D Xgwm539-2D locus 98.81 () Automated name-based View Maps
Wheat ABD - Wheat, Arina x Forno - Triticum-AxF-2D Xgwm539-2D locus 138.00 () Automated name-based View Maps
Wheat ABD - Wheat, Grandin x BR34 - Ta-Grandin/BR34-2D Xgwm539-2D locus 148.80 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-2D Xgwm539-2D locus 59.60 () Automated name-based View Maps
Wheat ABD - Wheat, WxM, FHB QTL - Triticum-WxM-FHB-QTL-2D Xgwm539-2D locus 114.90 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-2D Xgwm539-2D locus 90.90 () Automated name-based View Maps
Wheat ABD - Wheat, Courtot x Chinese Spring, GPW - Ta-Courtot/CS-GPW-2D Xgwm539-2D locus 151.80 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-2D Xgwm539-2D locus 117.70 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_2D Xgwm539-2D locus 0.24 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-2D Xgwm539-2D locus 149.10 () Automated name-based View Maps
Xcfd73-2D locus 150.10 Wheat ABD - Wheat 2008, Corrigin x CS(T2D), C gene - Wheat-2008-Corrigin-CS(T2D)-2D Xcfd73-2D locus 100.00 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 2D cfd73 locus 45.20 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 2B cfd73 locus 63.30 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-2D Xcfd73-2D locus 141.70 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-2D Xcfd73-2D locus 77.60 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_2D Xcfd73-2D locus 0.88 () Automated name-based View Maps
Xgwm608.1-2D locus 155.70 No other positions
Xwmc170a-2D locus 156.20 No other positions
Xpsr331.1-2D locus 156.70 No other positions
Xm86p65.3-2D locus 166.30 No other positions
Xm51p65.0-2D locus 167.50 No other positions
Xgwm301-2D locus 190.70 Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-2D Xgwm301-2D locus 146.80 () Automated name-based View Maps
Wheat ABD - Wheat 2008, Corrigin x CS(T2D), C gene - Wheat-2008-Corrigin-CS(T2D)-2D Xgwm301-2D locus 152.00 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-2D Xgwm301-2D locus 107.00 () Automated name-based View Maps
Wheat ABD - Wheat, WxM, FHB QTL - Triticum-WxM-FHB-QTL-2D Xgwm301-2D locus 190.00 () Automated name-based View Maps
Wheat ABD - Wheat, Arina x Forno - Triticum-AxF-2D Xgwm301-2D locus 225.00 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_2D Xgwm301-2D locus 0.88 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-2D Xgwm301-2D locus 78.80 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-2D Xgwm301-2D locus 179.10 () Automated name-based View Maps
Xcfd50a-2D locus 190.70 No other positions
Xgwm311.1-2D locus 190.70 No other positions
Xgwm349-2D locus 196.30 Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-2D Xgwm349-2D locus 79.10 () Automated name-based View Maps
Wheat ABD - Wheat, WxM, FHB QTL - Triticum-WxM-FHB-QTL-2D Xgwm349-2D locus 164.90 () Automated name-based View Maps
Wheat ABD - Wheat, Arina x Forno - Triticum-AxF-2D Xgwm349-2D locus 194.00 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-2D Xgwm349-2D locus 93.20 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-2D Xgwm349-2D locus 147.00 () Automated name-based View Maps
Wheat ABD - Wheat, Conan x Reeder - Conan/Reeder-2D Xgwm349-2D locus 143.79 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_2D Xgwm349-2D locus 0.24 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-2D Xgwm349-2D locus 179.20 () Automated name-based View Maps
Wheat ABD - Wheat, Courtot x Chinese Spring, GPW - Ta-Courtot/CS-GPW-2D Xgwm349-2D locus 237.40 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.