*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat ABD-Wheat, Chinese Spring x SQ1
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps CS/SQ1-3A
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Wheat ABD - Wheat, Chinese Spring x SQ1 [ View Map Set Info ]
Map Name: CS/SQ1-3A
Map Start: 0
Map Stop: 157.1
Features by Type:
24 locus
24 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 24 of 24.
Wheat ABD - Wheat, Chinese Spring x SQ1 - CS/SQ1-3A
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xm60p64.5-3A locus 0 No other positions
Xpsr345.2-3A locus 2.2 Wheat ABD - 3B Physical - Physical-3B psr345 locus -0.52 () Automated name-based View Maps
Xbarc12-3A locus 6.6 Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-3A Xbarc12-3A locus 21.1 () Automated name-based View Maps
Wheat A - T. boeoticum x monococcum - T.b.xT.m.-3A Xbarc12-3A locus 33.6 () Automated name-based View Maps
Wheat ABD - Wheat_Yr76_2016 - Wheat_Yr76_2016-3A Xbarc12-3A locus 26 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Louise x Penawawa - Louise/Penawawa-3A Xbarc12-3A locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_3A Xbarc12-3A locus -0.72 () Automated name-based View Maps
Xwmc11a-3A locus 8.8 No other positions
Xwmc532-3A locus 15.6 Wheat ABD - Wheat_Yr76_2016 - Wheat_Yr76_2016-3A Xwmc532-3A locus 16.5 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 3A wmc532 locus 11.8 () Automated name-based View Maps
Wheat ABD - Wheat, Louise x Penawawa - Louise/Penawawa-3A Xwmc532-3A locus 9.3 () Automated name-based View Maps
Wheat AB - Durum wheat, Kofa x UC1113 - Kofa/UC1113-3A Xwmc532-3A locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-3A Xwmc532-3A locus 5.7 () Automated name-based View Maps
Wheat ABD - Wheat, Yr Update, 2021 - Wheat_Yr_2021-3A wmc532 locus 25.44 (cM) Automated name-based View Maps
Wheat ABD - Wheat_Yr76_2016 - Wheat_Yr76_2016-3A wmc532 locus 16.5 (cM) Automated name-based View Maps
Stb6 locus 27.7 No other positions
Xpsr598-3A locus 64.3 Wheat AB - T. turgidum, Messapia x dicoccoides - Tturgidum-MxM-3A Xpsr598-3A locus -17.3 () Automated name-based View Maps
Wheat ABD - Wheat, Gale - Ta-Gale-3A Xpsr598-3A locus -11.4 () Automated name-based View Maps
Wheat AB - T. turgidum, Messapia x dicoccoides, SSR - Tturgidum-SSR-3A Xpsr598-3A locus -27.9 () Automated name-based View Maps
Wheat ABD - Wheat, Forno x Oberkulmer - Triticum-FxO-3A Xpsr598-3A locus 51 () Automated name-based View Maps
Wheat AB - T. turgidum, Messapia x dicoccoides, AFLP - Tturgidum-MxM-AFLP-3A Xpsr598-3A locus 0 () Automated name-based View Maps
Wheat ABD - 3A, SxY, QTL - 3A-SxY Xpsr598-3A locus 185 () Automated name-based View Maps
Xpsr930-3A locus 64.3 No other positions
Xcfa2163a-3A locus 64.3 No other positions
Xgwm2-3A locus 65.5 Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_3A Xgwm2-3A locus -0.72 () Automated name-based View Maps
Wheat ABD - Wheat, Courtot x Chinese Spring, GPW - Ta-Courtot/CS-GPW-3A Xgwm2-3A locus 66.3 () Automated name-based View Maps
Wheat AB - T. turgidum, Omrabi5 x dicoccoides, QTL - Tt-Oxd-QTL-3A Xgwm2-3A locus 50 () Automated name-based View Maps
Wheat ABD - Wheat, Sphaerococcoid Genes - Ta-Sphaerococcoid-3A Xgwm2-3A locus 45.2 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-3A Xgwm2-3A locus 37 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, update - Ta-Synthetic/Opata-update-3A Xgwm2-3A locus 90.8 () Automated name-based View Maps
Wheat ABD - Wheat_Yr79_2018 - Wheat_Yr79_2018-3AL Xgwm2-3A locus 68 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-3A Xgwm2-3A locus 54.9 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-3A Xgwm2-3A locus 41.7 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-3A Xgwm2-3A locus 44.2 () Automated name-based View Maps
Wheat AB - T.dicoccoides, FHB QTL - Tdicoccoides-FHB-QTL-3AS Xgwm2-3A locus 22.2 () Automated name-based View Maps
Wheat ABD - Wheat_Yr76_2016 - Wheat_Yr76_2016-3A Xgwm2-3A locus 47.7 (cM) Automated name-based View Maps
Xpsp3047-3A locus 73.3 Wheat ABD - Wheat, Courtot x Chinese Spring, GPW - Ta-Courtot/CS-GPW-3A Xpsp3047-3A locus 86.4 () Automated name-based View Maps
Wheat ABD - Wheat, Gale - Ta-Gale-3A Xpsp3047-3A locus 0.75 () Automated name-based View Maps
Xm17p77.12-3A locus 73.8 No other positions
Xcfa2164a-3A locus 74.3 No other positions
Xcfa2234-3A locus 74.3 Wheat AB - Durum wheat, Kofa x UC1113 - Kofa/UC1113-3A Xcfa2234-3A locus 41.3 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 3A cfa2234 locus 33.1 () Automated name-based View Maps
Wheat ABD - Wheat, Yr Update, 2021 - Wheat_Yr_2021-3A cfa2234 locus 71.64 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Courtot x Chinese Spring, GPW - Ta-Courtot/CS-GPW-3A Xcfa2234-3A locus 88.7 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-3A Xcfa2234-3A locus 51.6 () Automated name-based View Maps
Xcfa2262-3A locus 93.6 Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-3A Xcfa2262-3A locus 64.4 () Automated name-based View Maps
Wheat ABD - Wheat, Arina x Forno - Triticum-AxF-3A Xcfa2262-3A locus 97.5 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-3A Xcfa2262-3A locus 66 () Automated name-based View Maps
Xcfa2193-3A locus 115.7 Wheat ABD - Wheat, P91193D1 x P92201D5 - P91193D1/P92201D5-3A Xcfa2193-3A locus 143.8 () Automated name-based View Maps
Wheat ABD - Wheat, Courtot x Chinese Spring, GPW - Ta-Courtot/CS-GPW-3A Xcfa2193-3A locus 178.5 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-3A Xcfa2193-3A locus 73.8 () Automated name-based View Maps
Wheat AB - Durum wheat, Kofa x UC1113 - Kofa/UC1113-3A Xcfa2193-3A locus 130.9 () Automated name-based View Maps
Wheat ABD - Wheat, Yr Update, 2021 - Wheat_Yr_2021-3A cfa2193 locus 144.26 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 3A cfa2193 locus 66.7 () Automated name-based View Maps
Wheat ABD - Wheat, Louise x Penawawa - Louise/Penawawa-3A Xcfa2193-3A locus 75.8 () Automated name-based View Maps
Xm69p78.3-3A locus 131.3 No other positions
Xm69p78.8-3A locus 133.5 No other positions
Xwmc322-3A locus 133.5 Wheat A - T. boeoticum x monococcum - T.b.xT.m.-3A Xwmc322-3A locus 222.6 () Automated name-based View Maps
Wheat ABD - Wheat, Conan x Reeder - Conan/Reeder-3A Xwmc322-3A locus 135.26 () Automated name-based View Maps
Xm71p77.1-3A locus 133.5 No other positions
Xgwm480-3A locus 133.5 Wheat ABD - Wheat, Synthetic x Opata, update - Ta-Synthetic/Opata-update-3A Xgwm480-3A locus 304.5 () Automated name-based View Maps
Wheat ABD - Wheat, P91193D1 x P92201D5 - P91193D1/P92201D5-3A Xgwm480-3A locus 66.8 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-3A Xgwm480-3A locus 111.85 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-3A Xgwm480-3A locus 84.1 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-3A Xgwm480-3A locus 115.8 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_3A Xgwm480-3A locus 0.21 () Automated name-based View Maps
Wheat ABD - Wheat, Sphaerococcoid Genes - Ta-Sphaerococcoid-3A Xgwm480-3A locus 138.6 () Automated name-based View Maps
Wheat AB - T.dicoccoides, FHB QTL - Tdicoccoides-FHB-QTL-3AS Xgwm480-3A locus 122.8 () Automated name-based View Maps
Xwmc169-3A locus 134.6 Wheat ABD - Wheat, Courtot x Chinese Spring, GPW - Ta-Courtot/CS-GPW-3A Xwmc169-3A locus 217.1 () Automated name-based View Maps
Wheat ABD - Wheat, Louise x Penawawa - Louise/Penawawa-3A Xwmc169-3A locus 104.5 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR 2 - Ta-Synthetic/Opata-SSR2-3A Xwmc169-3A locus 125 () Automated name-based View Maps
Wheat ABD - Wheat, Conan x Reeder - Conan/Reeder-3A Xwmc169-3A locus 133.42 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 3A wmc169 locus 75.8 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-3A Xwmc169-3A locus 99.3 () Automated name-based View Maps
Wheat ABD - 3B Physical - Physical-3B wmc169 locus 139.06 () Automated name-based View Maps
Xwmc388a-3A locus 136.7 Wheat AB - Wheat AB, Carotenoid QTL, 2017 - Wheat_AB_2017_Carotenoid_QTL-5A wmc388 locus 128.7 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 3A wmc388 locus 32.2 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 5A wmc388 locus 52.4 () Automated name-based View Maps
Xpsr1203.1-3A locus 157.1 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.