*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat ABD-Wheat, Composite, 2004
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Wheat-Composite2004-3B
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
qtl
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Wheat ABD - Wheat, Composite, 2004 [ View Map Set Info ]
Map Name: Wheat-Composite2004-3B
Map Start: 2
Map Stop: 112
Features by Type:
239 locus
4 qtl
243 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 243.       of 10 | Next
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-3B
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xpsr156 locus 48 Rye - Rye_2009_consensus - Rye-2009-Consensus-3R Xpsr156 locus 90.4 () Automated name-based View Maps
Wheat D - T.tauschii, Appels - Tt-Appels-3D Xpsr156 locus 14.7 () Automated name-based View Maps
Rye - Rye, ExR - Secale-ExR-3 Xpsr156 locus 89.9 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-3R Xpsr156 locus 1.4 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-3A Xpsr156 locus 87 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-3R Xpsr156 locus 64.2 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-3ABD Xpsr156 locus 35 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-3D Xpsr156 locus 2.94 () Automated name-based, Automated name-based View Maps
Xwmc334 locus 45 Wheat ABD - Wheat, CIMMYT Integrated - CIMMYT-integrated-3B Xwmc334 locus 58.89 () Automated name-based View Maps
Wheat ABD - 3B Physical - Physical-3B wmc334 locus 74.4 () Automated name-based View Maps
Xwmc291 locus 55 Wheat ABD - Wheat, Yr Update, 2021 - Wheat_Yr_2021-3B wmc291 locus 139.59 (cM) Automated name-based View Maps
Wheat ABD - 3B Physical - Physical-3B wmc291 locus 94.1 () Automated name-based View Maps
Wheat ABD - Wheat, CIMMYT Integrated - CIMMYT-integrated-3B Xwmc291 locus 65.18 () Automated name-based View Maps
Wheat ABD - Wheat-2014-Consensus-Ug99-Update - Wheat-2014-Consensus-Ug99-Update wmc291 locus 97.2 () Automated name-based View Maps
Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-3B Xwmc291 locus 162.2 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 3B wmc291 locus 65.4 () Automated name-based View Maps
Wheat ABD - Wheat_Consensus_2014_Ug99_Rust - Wheat_Consensus_2014_Ug99_Rust_3 wmc291 locus 97.2 () Automated name-based View Maps
Xgwm108 locus 63 Wheat ABD - Wheat_Yr80_2018 - Wheat_Yr80_2018-3BL Xgwm108 locus 51.1 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-3B Xgwm108 locus 164.4 () Automated name-based View Maps
Wheat ABD - Wheat, CIMMYT Integrated - CIMMYT-integrated-3B Xgwm108 locus 65.18 () Automated name-based View Maps
Xwmc54 locus 23 Wheat ABD - Wheat, CIMMYT Integrated - CIMMYT-integrated-3B Xwmc54 locus 69.74 () Automated name-based View Maps
Wheat ABD - 3B Physical - Physical-3B wmc54 locus 21.12 () Automated name-based View Maps
Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-3B Xwmc54 locus 75.6 () Automated name-based View Maps
Xbarc84 locus 65 Wheat ABD - Wheat, CIMMYT Integrated - CIMMYT-integrated-3B Xbarc84 locus 75.79 () Automated name-based View Maps
Xgwm247 locus 101 Wheat ABD - Wheat, CIMMYT Integrated - CIMMYT-integrated-3B Xgwm247 locus 120.84 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-3A Xgwm247 locus 117 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-6R Xgwm247 locus 100.6 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-6R Xgwm247 locus 121.2 () Automated name-based View Maps
Xgwm389 locus 10 Wheat AB - T. turgidum, Langdon x G18-16 - Tt-LxG-3B Xgwm389 locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-3B Xgwm389 locus 2.7 () Automated name-based View Maps
Wheat ABD - Wheat, Avalon x Cadenza - Wheat, Avalon x Cadenza 3B Xgwm389 locus 73.9 () Automated name-based View Maps
Wheat AB - Durum wheat, Svevo x Ciccio - Svevo/Ciccio-3B Xgwm389 locus 6 () Automated name-based View Maps
Xgwm493 locus 20 Wheat AB - Durum wheat, Svevo x Ciccio - Svevo/Ciccio-3B Xgwm493 locus 20.4 () Automated name-based View Maps
Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-3B Xgwm493 locus 23 () Automated name-based View Maps
Wheat ABD - Wheat, Avalon x Cadenza - Wheat, Avalon x Cadenza 3B Xgwm493 locus 60 () Automated name-based View Maps
Wheat AB - T. turgidum, Langdon x G18-16 - Tt-LxG-3B Xgwm493 locus 17.1 () Automated name-based View Maps
Xgwm77 locus 46 Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-3B Xgwm77 locus 118.8 () Automated name-based View Maps
Wheat AB - T. turgidum, Langdon x G18-16 - Tt-LxG-3B Xgwm77 locus 69.2 () Automated name-based View Maps
Xgwm376 locus 45 Wheat AB - T. turgidum, Langdon x G18-16 - Tt-LxG-3B Xgwm376 locus 71.9 () Automated name-based View Maps
Wheat ABD - Wheat_Yr80_2018 - Wheat_Yr80_2018-3BL Xgwm376 locus 0 (cM) Automated name-based View Maps
Xgwm181 locus 99 Wheat AB - T. turgidum, Langdon x G18-16 - Tt-LxG-3B Xgwm181 locus 217.3 () Automated name-based View Maps
Wheat ABD - Wheat_YrH922_2019 - Wheat_YrH922_2019_exp Xgwm181 locus 22.8 (cM) Automated name-based View Maps
Xgwm156 locus 40 Wheat AB - T. turgidum, Langdon x G18-16 - Tt-LxG-5A Xgwm156 locus 54.8 () Automated name-based View Maps
Wheat AB - Durum wheat, Svevo x Ciccio - Svevo/Ciccio-5A Xgwm156 locus 39.3 () Automated name-based View Maps
Wheat ABD - Wheat, Avalon x Cadenza - Wheat, Avalon x Cadenza 5A1 Xgwm156 locus 84 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5A Xgwm156 locus 51 () Automated name-based View Maps
Xpsr689 locus 43 Rye - Rye, Hannover - Secale-Wricke-3R Xpsr689 locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-3D Xpsr689 locus -3.09 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-3ABD Xpsr689 locus -56 () Automated name-based, Automated name-based View Maps
Xbcd1380A locus 25 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-15 Xbcd1380A locus 14 () Automated name-based View Maps
Oat - Oat, KxO/QTL - Oat-KxO/Q-15 Xbcd1380A locus 51.4 () Automated name-based View Maps
Oat - Oat-1997-KxO-QTL - Oat-1997-KxO-QTL_15 Xbcd1380A locus 51.4 (cM) Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-15 Xbcd1380A locus 51.4 () Automated name-based View Maps
Xbcd1555 locus 63 Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-G Xbcd1555 locus 22.4 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_8 Xbcd1555 locus 19 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_24-26-34 Xbcd1555 locus 128.5 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_22 Xbcd1555 locus 19 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_8 Xbcd1555 locus 19 (cM) Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-34 Xbcd1555 locus 6.7 () Automated name-based View Maps
Oat - Oat, KxO/QTL - Oat-KxO/Q-34 Xbcd1555 locus 6.7 () Automated name-based View Maps
Oat - Oat-2003-OxM-QTL1 - Oat-2003-OxM-QTL1_5 Xbcd1555 locus 19 (cM) Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-34 Xbcd1555 locus 4 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_15 Xbcd1555 locus 19 (cM) Automated name-based View Maps
Xglk538a locus 30 No other positions
XksuG53 locus 15 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-3ABD XksuG53 locus -93 () Automated name-based, Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-3R XksuG53 locus 24.5 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-3D XksuG53 locus -3.09 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-3R XksuG53 locus 26.6 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-3R XksuG53 locus 61.8 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-3R XksuG53 locus -16 () Automated name-based View Maps
XksuH7 locus 51 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-3D XksuH7 locus -3.09 () Automated name-based, Automated name-based View Maps
XksuF34 locus 61 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-3D XksuF34 locus -0.59 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-3ABD XksuF34 locus -13 () Automated name-based, Automated name-based View Maps
XksuG62 locus 60 Rye - Rye, P87 x P105, update - Secale-PxP-update-3R XksuG62 locus 102.4 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-3ABD XksuG62 locus 89 () Automated name-based, Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-3A XksuG62 locus 41.6 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-3D XksuG62 locus 2.94 () Automated name-based, Automated name-based View Maps
Xbcd147 locus 63 Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-D Xbcd147 locus 33.5 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-6R Xbcd147 locus 14.1 () Automated name-based View Maps
Rye - Rye, ExR - Secale-ExR-6 Xbcd147 locus 73.3 () Automated name-based View Maps
Xbarc164 locus 55 Wheat ABD - 3B Physical - Physical-3B barc164 locus 72.43 () Automated name-based View Maps
Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-3B Xbarc164 locus 145.4 () Automated name-based View Maps
Wheat ABD - Wheat, Yr Update, 2021 - Wheat_Yr_2021-3B barc164 locus 103.87 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Avalon x Cadenza - Wheat, Avalon x Cadenza 3B Xbarc164 locus 136.4 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 3B barc164 locus 48.7 () Automated name-based View Maps
Wheat ABD - Wheat_2014_i9K_Ug99_PIxLMPG - Wheat_2014_i9K_Ug99_PIxLMPG_3B barc164 locus 52.2 () Automated name-based View Maps
Xbarc344 locus 57 Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 3B barc344 locus 63.4 () Automated name-based View Maps
Wheat ABD - 3B Physical - Physical-3B barc344 locus 92.16 () Automated name-based View Maps
Wheat AB - Wheat AB, Carotenoid QTL, 2017 - Wheat_AB_2017_Carotenoid_QTL-3B barc344 locus 133 () Automated name-based View Maps
Wheat ABD - Wheat, Yr Update, 2021 - Wheat_Yr_2021-3B barc344 locus 135.38 (cM) Automated name-based View Maps
Xbarc7 locus 71 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-2B Xbarc7 locus 64 () Automated name-based View Maps
Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-2B Xbarc7 locus 93.6 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.