*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat ABD-Wheat, Composite, 2004
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Wheat-Composite2004-5B
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
qtl
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Wheat ABD - Wheat, Composite, 2004 [ View Map Set Info ]
Map Name: Wheat-Composite2004-5B
Map Start: 0
Map Stop: 165
Features by Type:
238 locus
5 qtl
243 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 243.       of 10 | Next
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5B
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xpsr118 locus 49 Wheat D - T.tauschii, Appels - Tt-Appels-5D Xpsr118 locus 15.65 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5D Xpsr118 locus -1.36 () Automated name-based, Automated name-based View Maps
Barley - H. bulbosum, PB1 x PB11 - Hbulbosum-PB1xPB11-5 Xpsr118 locus 36 () Automated name-based View Maps
Wheat A - 5AS, T.m. G1777 x G2528 - 5AS, T.m. G1777 x G2528 Xpsr118 locus -1.1 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xpsr118 locus -26 () Automated name-based, Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-5A Xpsr118 locus 0 () Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-5H Xpsr118 locus -0.5 () Automated name-based View Maps
Xgwm234 locus 21 Wheat ABD - Wheat, Avalon x Cadenza - Wheat, Avalon x Cadenza 5B1 Xgwm234 locus 12.9 () Automated name-based View Maps
Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-5B Xgwm234 locus 12.5 () Automated name-based View Maps
Wheat AB - Durum wheat, Svevo x Ciccio - Svevo/Ciccio-5B Xgwm234 locus 0 () Automated name-based View Maps
Wheat AB - T. turgidum, Langdon x G18-16 - Tt-LxG-5B Xgwm234 locus 0 () Automated name-based View Maps
Xgwm371 locus 50 Wheat AB - T. turgidum, Langdon x G18-16 - Tt-LxG-5B Xgwm371 locus 54.8 () Automated name-based View Maps
Wheat ABD - Wheat, Finch x Eltan - Wheat, Finch x Eltan 5B.1 Xgwm371 locus 1.9 () Automated name-based View Maps
Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-5B Xgwm371 locus 77 () Automated name-based View Maps
Xgwm831 locus 54 Wheat AB - T. turgidum, Langdon x G18-16 - Tt-LxG-5B Xgwm831 locus 59.9 () Automated name-based View Maps
Xgwm499 locus 68 Wheat ABD - Wheat_Yr79_2018 - Wheat_Yr79_2018-5BS Xgwm499 locus 61.4 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-5B Xgwm499 locus 105.3 () Automated name-based View Maps
Wheat ABD - Wheat, Finch x Eltan - Wheat, Finch x Eltan 5B.1 Xgwm499 locus 8.6 () Automated name-based View Maps
Wheat AB - Durum wheat, Svevo x Ciccio - Svevo/Ciccio-5B Xgwm499 locus 60.5 () Automated name-based View Maps
Wheat AB - T. turgidum, Langdon x G18-16 - Tt-LxG-5B Xgwm499 locus 66.5 () Automated name-based View Maps
Xgwm777 locus 82 Wheat AB - T. turgidum, Langdon x G18-16 - Tt-LxG-5B Xgwm777 locus 104 () Automated name-based View Maps
Xgwm408 locus 108 Wheat AB - T. turgidum, Langdon x G18-16 - Tt-LxG-5B Xgwm408 locus 128.2 () Automated name-based View Maps
Wheat ABD - Wheat, Avalon x Cadenza - Wheat, Avalon x Cadenza 5B1 Xgwm408 locus 121.8 () Automated name-based View Maps
Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-5B Xgwm408 locus 160.9 () Automated name-based View Maps
Wheat AB - Durum wheat, Svevo x Ciccio - Svevo/Ciccio-5B Xgwm408 locus 103.2 () Automated name-based View Maps
Xpsr574 locus 51 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5A Xpsr574 locus 25 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-5R Xpsr574 locus 1.3 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-5R Xpsr574 locus 3.4 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-5R Xpsr574 locus 57.7 () Automated name-based View Maps
Xpsr911 locus 63 Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-5R Xpsr911 locus 89.2 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-5R Xpsr911 locus 78.8 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5A Xpsr911 locus 48 () Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-5H Xpsr911 locus 83.8 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-5R Xpsr911 locus 21.2 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-5R Xpsr911 locus 30.5 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-5 Xpsr911 locus 23 () Automated name-based View Maps
Xcdo400 locus 68 Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_11 Xcdo400 locus 16 (cM) Automated name-based View Maps
Diploid oat - Diploid Oat, AFLP - Avena-Yu-E Xcdo400 locus 593.4 () Automated name-based View Maps
Oat - Oat-2003-OxM-QTL1 - Oat-2003-OxM-QTL1_11 Xcdo400 locus 17.1 (cM) Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-14 Xcdo400 locus 22.5 () Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-E Xcdo400 locus 110.6 () Automated name-based View Maps
Oat - Oat-2000-KxO-Bgl - Oat-2000-KxO-Bgl_14 Xcdo400 locus 0 () Automated name-based View Maps
Oat - Oat-2000-KxM-Bgl - Oat-2000-KxM-Bgl_14 Xcdo400 locus 0 () Automated name-based View Maps
Wheat S^l^ - Oat-2004-SxW-RGA - Oat-2004-SxW-RGA_AswBF Xcdo400 locus 131.79 (cM) Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO14 Xcdo400 locus 14.12 (cM) Automated name-based View Maps
Oat - Oat-2001-KxM-QTL - Oat-2001-KxM-QTL_14 Xcdo400 locus 24 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5D Xcdo400 locus 4.81 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xcdo400 locus 73 () Automated name-based, Automated name-based View Maps
Xpsr157 locus 115 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-4D Xpsr157 locus 3.06 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-4ABD Xpsr157 locus 50 () Automated name-based, Automated name-based View Maps
Xglk510b locus 98 No other positions
Xabg705 locus 41 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5D Xabg705 locus -2.57 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xabg705 locus -66 () Automated name-based, Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-5A Xabg705 locus -7.7 () Automated name-based View Maps
Wheat A - 5AS, T.m. G3116 x DV92 - 5AS, T.m. G3116 x DV92 Xabg705 locus -7.8 () Automated name-based View Maps
Barley - 5HS, Steptoe x Morex - 5HS, Steptoe x Morex Xabg705 locus -16.1 () Automated name-based View Maps
Xcdo1335 locus 17 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5D Xcdo1335 locus -1.36 () Automated name-based, Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-F Xcdo1335 locus 55.3 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xcdo1335 locus -40 () Automated name-based, Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-30 Xcdo1335 locus 2.9 () Automated name-based View Maps
XksuA1 locus 55 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-7ABD XksuA1 locus -81 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5D XksuA1 locus 0.9 () Automated name-based, Automated name-based View Maps
Xwg909 locus 53 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xwg909 locus 29 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5D Xwg909 locus 0.9 () Automated name-based, Automated name-based View Maps
Wheat D - T.tauschii - Tt-Gill-5D WG909 locus 239.6 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 5B wg909 locus 37.7 () Automated name-based View Maps
Xwg889 locus 52 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5D Xwg889 locus 3.51 () Automated name-based, Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-5H Xwg889 locus 25 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xwg889 locus 38 () Automated name-based, Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-5A Xwg889 locus 0.7 () Automated name-based View Maps
Xcdo412 locus 56 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xcdo412 locus 53 () Automated name-based, Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_26 Xcdo412 locus 9 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5D Xcdo412 locus 3.51 () Automated name-based, Automated name-based View Maps
Oat - Oat-2004-OxM-QTL4 - Oat-2004-OxM-QTL4_26 Xcdo412 locus 9.6 (cM) Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-E Xcdo412 locus 94.7 () Automated name-based View Maps
Xbcd351 locus 60 Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-5A Xbcd351 locus 27.1 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5D Xbcd351 locus 4.23 () Automated name-based, Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-5R Xbcd351 locus 6.3 () Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-E Xbcd351 locus 105.8 () Automated name-based View Maps
Rye - Rye, ExR - Secale-ExR-5 Xbcd351 locus 10.1 () Automated name-based View Maps
Xwg530 locus 60 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xwg530 locus 55 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5D Xwg530 locus 4.23 () Automated name-based, Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-5H Xwg530 locus 12.2 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-5A Xwg530 locus 29.6 () Automated name-based View Maps
Xcdo348 locus 108 Rye - Rye_2009_consensus - Rye-2009-Consensus-3R Xcdo348 locus 67.3 () Automated name-based View Maps
Rye - Rye, ExR - Secale-ExR-3 Xcdo348 locus 0 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-5A Xcdo348 locus 0.7 () Automated name-based View Maps
Xbcd9 locus 79 Rye - Rye, ExR - Secale-ExR-5 Xbcd9 locus 41.8 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-5A Xbcd9 locus 52.2 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-5R Xbcd9 locus 36.9 () Automated name-based View Maps
Xbcd221 locus 117 Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-F Xbcd221 locus 52.3 () Automated name-based View Maps
Rye - Rye, ExR - Secale-ExR-5 Xbcd221 locus 91.8 () Automated name-based View Maps
Xbarc4 locus 45 Wheat ABD - Wheat_Consensus_2014_Ug99_Rust - Wheat_Consensus_2014_Ug99_Rust_5 barc4 locus 42.91 () Automated name-based View Maps
Wheat ABD - Wheat, Yr Update, 2021 - Wheat_Yr_2021-5B barc4 locus 52.1 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 5B barc4 locus 22 () Automated name-based View Maps
Wheat ABD - Wheat-2014-Consensus-Ug99-Update - Wheat-2014-Consensus-Ug99-Update barc4 locus 42.91 () Automated name-based View Maps
Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-5B Xbarc4 locus 46.6 () Automated name-based View Maps
Xgwm540 locus 45 Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-5B Xgwm540 locus 46.6 () Automated name-based View Maps
Wheat ABD - Wheat_Yr79_2018 - Wheat_Yr79_2018-5BS Xgwm540 locus 37 (cM) Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.