*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat ABD-Wheat, Composite, 2004
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Wheat-Composite2004-5D
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
baccontig
locus
qtl
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Wheat ABD - Wheat, Composite, 2004 [ View Map Set Info ]
Map Name: Wheat-Composite2004-5D
Map Start: 0
Map Stop: 120
Features by Type:
11 baccontig
148 locus
1 qtl
160 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 160.       of 7 | Next
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5D
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
XksuD30 locus 20 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD XksuD30 locus 35 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5D XksuD30 locus 2.78 () Automated name-based, Automated name-based View Maps
Xgwm192 locus 8 Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-4B Xgwm192 locus 34.7 () Automated name-based View Maps
Xgdm68 locus 18 Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-5A Xgdm68 locus 70.5 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 5A gdm68 locus 23.1 () Automated name-based View Maps
Xgwm271 locus 61 Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-5B Xgwm271 locus 152.8 () Automated name-based View Maps
Xwmc160 locus 77 Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 5B wmc160 locus 74.7 () Automated name-based View Maps
Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-5B Xwmc160 locus 198.3 () Automated name-based View Maps
Xcfd18 locus 1 Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-5D Xcfd18 locus 10.2 () Automated name-based View Maps
Xgwm190 locus 5 Wheat ABD - Wheat, Avalon x Cadenza - Wheat, Avalon x Cadenza 5D Xgwm190 locus 11.9 () Automated name-based View Maps
Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-5D Xgwm190 locus 16 () Automated name-based View Maps
Xcfd78 locus 15 Wheat ABD - Wheat, Yr Update, 2021 - Wheat_Yr_2021-5D cfd78 locus 48.09 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-5D Xcfd78 locus 52.4 () Automated name-based View Maps
Wheat ABD - Wheat, Axiom 2018, Consensus - Wheat-Axiom2018-Cons-2A AX-95073436 locus (cM) Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 5D cfd78 locus 25.6 () Automated name-based View Maps
Xgwm583 locus 45 Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-5D Xgwm583 locus 92 () Automated name-based View Maps
Xbarc320 locus 56 Wheat ABD - Wheat, Axiom 2018, Consensus - Wheat-Axiom2018-Cons-2A AX-94625433 locus (cM) Automated name-based View Maps
Wheat ABD - Wheat, Yr Update, 2021 - Wheat_Yr_2021-5D barc320 locus 105.5 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-5D Xbarc320 locus 133.6 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 5D barc320 locus 56.3 () Automated name-based View Maps
Xwmc215 locus 69 Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 3A wmc215 locus 70.6 () Automated name-based View Maps
Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-5D Xwmc215 locus 147.9 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 5D wmc215 locus 59.1 () Automated name-based View Maps
Xgwm212 locus 72 Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-5D Xgwm212 locus 149.1 () Automated name-based View Maps
Xcfd29 locus 74 Wheat ABD - Wheat, Yr Update, 2021 - Wheat_Yr_2021-5D cfd29 locus 121.76 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 5D cfd29 locus 64.9 () Automated name-based View Maps
Wheat ABD - Wheat, Axiom 2018, Consensus - Wheat-Axiom2018-Cons-2A AX-94619928 locus (cM) Automated name-based View Maps
Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-5D Xcfd29 locus 161.9 () Automated name-based View Maps
Xwmc97 locus 77 Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-5D Xwmc97 locus 183.7 () Automated name-based View Maps
Xbarc110 locus 83 Wheat ABD - Wheat, Avalon x Cadenza - Wheat, Avalon x Cadenza 5D Xbarc110 locus 137.8 () Automated name-based View Maps
Wheat ABD - Wheat, Axiom 2018, Consensus - Wheat-Axiom2018-Cons-2A AX-94638424 locus (cM) Automated name-based View Maps
Wheat ABD - Wheat, Yr Update, 2021 - Wheat_Yr_2021-5D barc110 locus 155.58 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 5D barc110 locus 83 () Automated name-based View Maps
Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-5D Xbarc110 locus 212.8 () Automated name-based View Maps
Xbarc177 locus 93 Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-5D Xbarc177 locus 231.1 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 5D barc177 locus 94.3 () Automated name-based View Maps
Xbarc144 locus 97 Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-5D Xbarc144 locus 246.2 () Automated name-based View Maps
Xgwm565 locus 99 Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-5D Xgwm565 locus 247 () Automated name-based View Maps
Xgwm272 locus 102 Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-5D Xgwm272 locus 252.5 () Automated name-based View Maps
Xbcd1103 locus 79 Oat - Oat-2003-OxM-QTL1 - Oat-2003-OxM-QTL1_7 Xbcd1103 locus 62.8 (cM) Automated name-based View Maps
Oat - Oat-2004-OxM-QTL4 - Oat-2004-OxM-QTL4_7 Xbcd1103 locus 62.8 (cM) Automated name-based View Maps
Oat - Oat-2003-OxM-QTL3 - Oat-2003-OxM-QTL3_7 Xbcd1103 locus 62.8 (cM) Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-24 Xbcd1103 locus 52.2 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_14 Xbcd1103 locus 62 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_24-26-34 Xbcd1103 locus 85 (cM) Automated name-based View Maps
Oat - Oat-2003-OxM-QTL1 - Oat-2003-OxM-QTL1_28 Xbcd1103 locus 62 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_7 Xbcd1103 locus 62 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_7 Xbcd1103 locus 62 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_28 Xbcd1103 locus 62 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_21 Xbcd1103 locus 62 (cM) Automated name-based View Maps
Xbcd1421 locus 97 Barley - H. bulbosum, PB1 x PB11 - Hbulbosum-PB1xPB11-7 Xbcd1421 locus 47 () Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-E Xbcd1421 locus 74.9 () Automated name-based View Maps
Xbcd1874 locus 36 Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-C Xbcd1874 locus 18 () Automated name-based View Maps
Xcdo57B locus 39 Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_10 Xcdo57B locus 49 (cM) Automated name-based View Maps
Oat - Oat-2004-OxM-QTL4 - Oat-2004-OxM-QTL4_10 Xcdo57B locus 52.7 (cM) Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-20 Xcdo57B locus 10.7 () Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_8 Xcdo57B locus 99 (cM) Automated name-based View Maps
Oat - Oat-2000-KxO-Bgl - Oat-2000-KxO-Bgl_20 Xcdo57B locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5A Xcdo57B locus 50 () Automated name-based View Maps
Xcdo346A locus 82 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5B Xcdo346A locus 76 () Automated name-based View Maps
Oat - Oat-2001-KxO-QTL - Oat-2001-KxO-QTL_3-38 Xcdo346A locus 133.75 (cM) Automated name-based View Maps
Oat - Oat-1996-OT328xDumont - Oat-1996-OT328xDumont_3 Xcdo346A locus 14.55 (cM) Automated name-based View Maps
Oat - Oat-2001-KxM-QTL - Oat-2001-KxM-QTL_3 Xcdo346A locus 23 (cM) Automated name-based View Maps
Oat - Oat-2000-KxO-Bgl - Oat-2000-KxO-Bgl_3 Xcdo346A locus 0 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_3-38 Xcdo346A locus 133.75 (cM) Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-3 Xcdo346A locus 38.2 () Automated name-based View Maps
Xcdo412B locus 33 Oat - Oat-2001-KxO - Oat-2001-KxO_16-23 Xcdo412B locus 22.5 (cM) Automated name-based View Maps
Oat - Oat-1997-64Lines - Oat-1997-64Lines_23 Xcdo412B locus 8.8 (cM) Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-23 Xcdo412B locus 27 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.