*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat ABD-Wheat, Composite, 2004
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Wheat-Composite2004-6D
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
baccontig
locus
qtl
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Wheat ABD - Wheat, Composite, 2004 [ View Map Set Info ]
Map Name: Wheat-Composite2004-6D
Map Start: 0
Map Stop: 203
Features by Type:
35 baccontig
139 locus
2 qtl
176 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 176.       of 8 | Next
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-6D
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xpsr371 locus 87 Rye - Rye_2009_consensus - Rye-2009-Consensus-6R Xpsr371 locus 66.4 () Automated name-based View Maps
Rye - Rye, Hannover - Secale-Wricke-6R Xpsr371 locus 22.7 () Automated name-based View Maps
Rye - Rye, ExR - Secale-ExR-6 Xpsr371 locus 5.1 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-6A Xpsr371 locus 0.7 () Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-6 Xpsr371 locus 66.8 () Automated name-based View Maps
Xpsr627 locus 69 Rye - Rye, P87 x P105, update - Secale-PxP-update-6R Xpsr627 locus 7.1 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-6 Xpsr627 locus 7.1 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-6R Xpsr627 locus 20 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-6A Xpsr627 locus 74 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-6R Xpsr627 locus 68.2 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-6R Xpsr627 locus -58.1 () Automated name-based View Maps
Xgdm98-6D locus 203 Wheat ABD - Wheat, Synthetic x Opata, SSR-D - Ta-Synthetic/Opata-SSR_D-6D Xgdm98-6D locus 141.4 () Automated name-based View Maps
Xtam31 locus 87 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-6ABD Xtam31 locus -52 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-6D Xtam31 locus -3.05 () Automated name-based, Automated name-based View Maps
Xwg933 locus 92 Wheat D - T.tauschii - Tt-Gill-6D WG933 locus 244.9 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-6ABD Xwg933 locus 46 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-6D Xwg933 locus 1.83 () Automated name-based, Automated name-based View Maps
XksuD1 locus 128 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-6D XksuD1 locus 3.46 () Automated name-based, Automated name-based View Maps
XksuE14b locus 125 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-6D XksuE14b locus 3.46 () Automated name-based, Automated name-based View Maps
Xbarc183 locus 15 Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 2A barc183 locus 57 () Automated name-based View Maps
Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-2B Xbarc183 locus 96.7 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 2B barc183 locus 29.3 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 6D barc183 locus 15.6 () Automated name-based View Maps
Wheat ABD - Wheat, Avalon x Cadenza - Wheat, Avalon x Cadenza 6D Xbarc183 locus 1.2 () Automated name-based View Maps
Xcfd80 locus 76 Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-6A Xcfd80 locus 70.1 () Automated name-based View Maps
Wheat ABD - Wheat, Xiaoyan 54 x Jing 411_6A - Wheat, Xiaoyan 54 x Jing 411_6A Xcfd80 locus 3.3 () Automated name-based View Maps
Xcfd49 locus 15 Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-6D Xcfd49 locus 0 () Automated name-based View Maps
Xbarc173 locus 21 Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-6D Xbarc173 locus 25.3 () Automated name-based View Maps
Wheat ABD - Wheat, Avalon x Cadenza - Wheat, Avalon x Cadenza 6D Xbarc173 locus 16.1 () Automated name-based View Maps
Xgwm469 locus 39 Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-6D Xgwm469 locus 32.4 () Automated name-based View Maps
Xbarc204 locus 102 Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-6D Xbarc204 locus 135.4 () Automated name-based View Maps
Xcfd76 locus 89 Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-6D Xcfd76 locus 141 () Automated name-based View Maps
Xcfd95 locus 103 Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-6D Xcfd95 locus 155.9 () Automated name-based View Maps
Xcdo270A locus 77 Oat - Oat, KxO - Oat-KxO-2 Xcdo270A locus 11.5 () Automated name-based View Maps
Xabg466 locus 12 Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-6A Xabg466 locus -57.9 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-6A Xabg466 locus 44 () Automated name-based View Maps
Xabg20 locus 106 Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-6A Xabg20 locus 0 () Automated name-based View Maps
Xbarc273 locus 99 Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 6D barc273 locus 51.6 () Automated name-based View Maps
Xbarc1121 locus 105 Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 6D barc1121 locus 57.1 () Automated name-based View Maps
Wheat ABD - Wheat, Yr Update, 2021 - Wheat_Yr_2021-6D barc1121 locus 96.09 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Axiom 2018, Consensus - Wheat-Axiom2018-Cons-4B AX-94622395 locus (cM) Automated name-based View Maps
Xcfd19a locus 69 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1D Xcfd19a locus 74 () Automated name-based View Maps
Xgwm55a locus 83 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-2B Xgwm55a locus 52 () Automated name-based View Maps
Xgwm55b locus 106 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-2B Xgwm55b locus 81 () Automated name-based View Maps
Xcfd213a locus 23 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-3D Xcfd213a locus 97 () Automated name-based View Maps
XksuE3a locus 160 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-4A XksuE3a locus 86 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.