*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat ABD-Wheat, Composite, 2004
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Wheat-Composite2004-7A
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
qtl
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Wheat ABD - Wheat, Composite, 2004 [ View Map Set Info ]
Map Name: Wheat-Composite2004-7A
Map Start: 0
Map Stop: 223
Features by Type:
166 locus
2 qtl
168 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 168.       of 7 | Next
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-7A
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xcdo545 locus 5 Rye - Rye_2009_consensus - Rye-2009-Consensus-7R Xcdo545 locus 11.4 () Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-7 Xcdo545 locus 19.9 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-17 Xcdo545 locus 49.3 () Automated name-based View Maps
Diploid oat - Diploid Oat, AFLP - Avena-Yu-D Xcdo545 locus 191.5 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_19 Xcdo545 locus 69 (cM) Automated name-based View Maps
Barley - H. bulbosum, PB1 x PB11 - Hbulbosum-PB1xPB11-7 Xcdo545 locus 8 () Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-D Xcdo545 locus 16.2 () Automated name-based View Maps
XksuH9 locus 77 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2ABD XksuH9 locus 95 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-2D XksuH9 locus 113 () Automated name-based View Maps
Wheat D - T.tauschii, Appels - Tt-Appels-2D XksuH9 locus 27.45 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2D XksuH9 locus 4.98 () Automated name-based, Automated name-based View Maps
Xgwm526 locus 26 Wheat ABD - Wheat, Avalon x Cadenza - Wheat, Avalon x Cadenza 2A Xgwm526 locus 180.5 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-2B Xgwm526 locus 99 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-7B Xgwm526 locus 28 () Automated name-based View Maps
Wheat AB - T. turgidum, Langdon x G18-16 - Tt-LxG-2A Xgwm526 locus 170.4 () Automated name-based View Maps
Wheat ABD - Wheat, Avalon x Cadenza - Wheat, Avalon x Cadenza 2B Xgwm526 locus 136.3 () Automated name-based View Maps
Xcdo595 locus 103 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-7B Xcdo595 locus 46 () Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-6-37 Xcdo595 locus 96 () Automated name-based View Maps
Oat - Oat-2007-OxT-PcQTL - Oat-2007-OxT_2 Xcdo595 locus 49.4 (cM) Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-D Xcdo595 locus 34.1 () Automated name-based View Maps
Oat - Oat-1997-64Lines - Oat-1997-64Lines_6 Xcdo595 locus 71.8 (cM) Automated name-based View Maps
Oat - Oat, KxO/QTL - Oat-KxO/Q-6 Xcdo595 locus 84.5 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_6 Xcdo595 locus 71.25 (cM) Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-2 Xcdo595 locus 69.8 () Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_2 Xcdo595 locus 43 (cM) Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xcdo595 locus 68 () Automated name-based View Maps
Oat - Oat-2001-KxO-QTL - Oat-2001-KxO-QTL_6 Xcdo595 locus 71.25 (cM) Automated name-based View Maps
Barley - H. bulbosum, PB1 x PB11 - Hbulbosum-PB1xPB11-7 Xcdo595 locus 24 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-6 Xcdo595 locus 84.5 () Automated name-based View Maps
Oat - Oat-1997-KxO-QTL - Oat-1997-KxO-QTL_6 Xcdo595 locus 84.5 (cM) Automated name-based View Maps
Xcdo962A locus 50 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-17 Xcdo962A locus 20 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-17 Xcdo962A locus 16.5 () Automated name-based View Maps
Oat - Oat, KxO/QTL - Oat-KxO/Q-17 Xcdo962A locus 16.5 () Automated name-based View Maps
Xmwg938 locus 183 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-1D Xmwg938 locus -2.59 () Automated name-based, Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-1 Xmwg938 locus 0 () Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-A Xmwg938 locus -3 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-1R Xmwg938 locus 2.1 () Automated name-based View Maps
Xwg380 locus 194 Rye - Rye_2009_consensus - Rye-2009-Consensus-5R Xwg380 locus 9.4 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-7ABD Xwg380 locus 97 () Automated name-based, Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-7A Xwg380 locus 30.9 () Automated name-based View Maps
Barley - H. bulbosum, PB1 x PB11 - Hbulbosum-PB1xPB11-7 Xwg380 locus 50 () Automated name-based View Maps
Rye - Rye, ExR - Secale-ExR-5 Xwg380 locus 19.9 () Automated name-based View Maps
Xwmc388 locus 14 Wheat ABD - Wheat, Avalon x Cadenza - Wheat, Avalon x Cadenza 7A1 Xwmc388 locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Avalon x Cadenza - Wheat, Avalon x Cadenza 7A1 Xwmc388 locus 29.8 () Automated name-based View Maps
Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-2A Xwmc388 locus 16.3 () Automated name-based View Maps
Xgwm471 locus 1 Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-7A Xgwm471 locus 14.7 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-7B Xgwm471 locus 20 () Automated name-based View Maps
Xgwm635 locus 12 Wheat ABD - Wheat, Avalon x Cadenza - Wheat, Avalon x Cadenza 7A1 Xgwm635 locus 20 () Automated name-based View Maps
Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-7A Xgwm635 locus 29.3 () Automated name-based View Maps
Wheat ABD - Wheat_Fhb7_2020 - Wheat_Fhb7_2020 Xgwm635 locus 3.12 (cM) Automated name-based View Maps
Xwmc479 locus 29 Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-7A Xwmc479 locus 39.7 () Automated name-based View Maps
Wheat AB - Durum wheat, Svevo x Ciccio - Svevo/Ciccio-7A Xwmc479 locus 0 () Automated name-based View Maps
Xwmc17 locus 105 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-7B Xwmc17 locus 51 () Automated name-based View Maps
Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-7A Xwmc17 locus 147.5 () Automated name-based View Maps
Xwmc9 locus 128 Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-7A Xwmc9 locus 156.3 () Automated name-based View Maps
Xgwm282 locus 170 Wheat AB - Wheat, P Gene, 2002 - Pgene-durum-x-polonicum_7A Xgwm282 locus 55.7 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-7A Xgwm282 locus 213.8 () Automated name-based View Maps
Wheat AB - Wheat, P Gene, 2002 - Pgene-durum-x-petropavlovskyi_7A Xgwm282 locus 160.3 (cM) Automated name-based View Maps
Xwmc116 locus 179 Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-7A Xwmc116 locus 230.8 () Automated name-based View Maps
Xwmc273.2 locus 206 Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-7D Xwmc273.2 locus 213.9 () Automated name-based View Maps
Xbcd907 locus 6 Oat - Oat-2001-KxO - Oat-2001-KxO_3-38 Xbcd907 locus 66.25 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO-QTL - Oat-2001-KxO-QTL_3-38 Xbcd907 locus 66.25 (cM) Automated name-based View Maps
Oat - Oat, KxO/QTL - Oat-KxO/Q-3 Xbcd907 locus 106.4 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-3 Xbcd907 locus 106.4 () Automated name-based View Maps
Xcdo17 locus 107 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-7B Xcdo17 locus 47 () Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-D Xcdo17 locus 30.2 () Automated name-based View Maps
Xcdo962B locus 126 Oat - Oat-2006-KxO-RGA - Oat-2006-KxO-RGA_KO7_10_28 Xcdo962B locus 5 (cM) Automated name-based View Maps
Oat - Oat-1997-KxO-QTL - Oat-1997-KxO-QTL_7 Xcdo962B locus 14.4 (cM) Automated name-based View Maps
Oat - Oat, KxO/QTL - Oat-KxO/Q-7 Xcdo962B locus 14.4 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_7-10-28 Xcdo962B locus 60 (cM) Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO7_10_28 Xcdo962B locus 67.53 (cM) Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-7 Xcdo962B locus 14.4 () Automated name-based View Maps
Xcdo1395 locus 30 Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-F Xcdo1395 locus 49.3 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-7B Xcdo1395 locus 30 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-4ABD Xcdo1395 locus 55 () Automated name-based, Automated name-based View Maps
XksuD2 locus 188 Rye - Rye, Ds2 x RxL10 - Secale-Devos-6R XksuD2 locus 75.6 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-6R XksuD2 locus 103.2 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-6R XksuD2 locus 153.3 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-7ABD XksuD2 locus 89 () Automated name-based, Automated name-based View Maps
Xrz682 locus 182 Oat - Oat-2009-SxW-RGA - Oat-2009-SxW-RGA_AswAC Xrz682 locus 78.1 (cM) Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-D Xrz682 locus 78.6 () Automated name-based View Maps
Xcdo475B locus 59 Oat - Oat, KxO - Oat-KxO-24 Xcdo475B locus 62.9 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-7B Xcdo475B locus 23 () Automated name-based View Maps
Xabc158 locus 38 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-7B Xabc158 locus 32 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-7A Xabc158 locus -25.1 () Automated name-based View Maps
Xpsr148 locus 207 Rye - Rye, Ds2 x RxL10 - Secale-Devos-6R Xpsr148 locus 105.8 () Automated name-based View Maps
Barley - H. bulbosum, PB1 x PB11 - Hbulbosum-PB1xPB11-7 Xpsr148 locus 88 () Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-7H Xpsr148 locus 110.2 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-6R Xpsr148 locus 84.1 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.