*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat ABD-Wheat, Conan x Reeder
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Conan/Reeder-1D
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Wheat ABD - Wheat, Conan x Reeder [ View Map Set Info ]
Map Name: Conan/Reeder-1D
Map Start: 0
Map Stop: 51.68
Features by Type:
9 locus
9 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 9 of 9.
Wheat ABD - Wheat, Conan x Reeder - Conan/Reeder-1D
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
XwPt7946-1D locus 0 No other positions
Xwmc222-1D locus 0 Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-1D Xwmc222-1D locus 29.7 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-1D Xwmc222-1D locus 36 () Automated name-based View Maps
XwPt9380-1D locus 27.46 Wheat ABD - Wheat, CIMMYT Integrated - CIMMYT-integrated-1D wPt9380 locus 49.23 () Automated name-based View Maps
Xbarc229-1D locus 28.69 Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-1D Xbarc229-1D locus 54.3 () Automated name-based View Maps
XwPt0413-1D locus 28.69 Wheat ABD - Wheat, CIMMYT Integrated - CIMMYT-integrated-1D wPt0413 locus 49.2 () Automated name-based View Maps
Wheat ABD - Wheat, USG3209 x Jaypee - USG3209/Jaypee-1D XwPt0413-1D locus 0 () Automated name-based View Maps
Xgwm458-1D locus 30.66 Wheat ABD - Wheat, Arina x Forno - Triticum-AxF-1D Xgwm458-1D locus 61.9 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-1D Xgwm458-1D locus 58.7 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-1D Xgwm458-1D locus 55.3 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-1D Xgwm458-1D locus 69.7 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_1D Xgwm458-1D locus 0.09 () Automated name-based View Maps
Xgdm19-1D locus 34.73 Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-1D Xgdm19-1D locus 73.2 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_1D Xgdm19-1D locus 0.7 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR-D - Ta-Synthetic/Opata-SSR_D-1D Xgdm19-1D locus 66.8 () Automated name-based View Maps
Wheat ABD - Wheat, Arina x Forno - Triticum-AxF-1D Xgdm19-1D locus 63.6 () Automated name-based View Maps
XwPt0077-1D locus 48.15 Wheat ABD - Wheat, CIMMYT Integrated - CIMMYT-integrated-1D wPt0077 locus 59.55 () Automated name-based View Maps
Rht-D1 locus 51.68 Wheat ABD - Wheat, Avalon x Cadenza - Wheat, Avalon x Cadenza 4D Rht-D1 locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-4D Rht-D1 locus 44 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.