*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat ABD-Wheat, Gale
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Ta-Gale-5D
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
baccontig
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Wheat ABD - Wheat, Gale [ View Map Set Info ]
Map Name: Ta-Gale-5D
Map Start: -40
Map Stop: 123.9
Features by Type:
28 baccontig
50 locus
78 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 78.       of 4 | Next
Wheat ABD - Wheat, Gale - Ta-Gale-5D
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Centromere locus 0 Rye - Rye, Ds2 x RxL10 - Secale-Devos-7R Centromere locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Gale - Ta-Gale-1B Centromere locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-1B Centromere locus 36.4 () Automated name-based View Maps
Barley - Barley, CxHs - Hordeum-Laurie2-2H Centromere locus 74.1 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-2A Centromere locus 126.7 () Automated name-based View Maps
Wheat ABD - Wheat genes - Triticum-Genes-7B Centromere locus 0 () Automated name-based View Maps
Wheat ABD - Wheat genes - Triticum-Genes-3D Centromere locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-2B Centromere locus 73.5 () Automated name-based View Maps
Wheat ABD - Wheat, Gale - Ta-Gale-7B Centromere locus 0 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-3A Centromere locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Gale - Ta-Gale-2A Centromere locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-6A Centromere locus 0 () Automated name-based View Maps
Barley - Barley, physical - Hordeum-Physical-RFLP-1H Centromere locus 62 () Automated name-based View Maps
Wheat ABD - Wheat genes - Triticum-Genes-6D Centromere locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Gale - Ta-Gale-1A Centromere locus 0 () Automated name-based View Maps
Wheat ABD - Triticeae consensus - Triticeae-Sorrells-1 Centromere locus 50.2 () Automated name-based View Maps
Wheat ABD - Wheat, Gale - Ta-Gale-6D Centromere locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Gale - Ta-Gale-6A Centromere locus 0 () Automated name-based View Maps
Wheat ABD - Wheat genes - Triticum-Genes-7A Centromere locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Gale - Ta-Gale-3D Centromere locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-3B Centromere locus 87 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-6A Centromere locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Gale - Ta-Gale-5B Centromere locus 0 () Automated name-based View Maps
Wheat ABD - Wheat genes - Triticum-Genes-4B Centromere locus 0 () Automated name-based View Maps
Wheat ABD - Triticeae consensus - Triticeae-Sorrells-2 Centromere locus 129 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-1A Centromere locus 0 () Automated name-based View Maps
Wheat D - T.tauschii, Appels - Tt-Appels-1D Centromere locus 11.35 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-4A Centromere locus 23.7 () Automated name-based View Maps
Wheat ABD - Wheat genes - Triticum-Genes-1D Centromere locus 0 () Automated name-based View Maps
Wheat ABD - Triticeae consensus - Triticeae-Hart-6 Centromere locus 0 () Automated name-based View Maps
Wheat ABD - Wheat genes - Triticum-Genes-4D Centromere locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Gale - Ta-Gale-2D Centromere locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Gale - Ta-Gale-4D Centromere locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-6D Centromere locus 0 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-4R Centromere locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-5A Centromere locus 9.8 () Automated name-based View Maps
Wheat ABD - Triticum, CS-G1777 DS1A^m^(1A) RSL - TmTa-Dubcovsky-1A Centromere locus 0 () Automated name-based View Maps
Wheat ABD - 5DS, CS x RL5406 - 5DS, CS x RL5406 Centromere locus 0 () Automated name-based View Maps
Wheat ABD - Wheat genes - Triticum-Genes-3A Centromere locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-7D Centromere locus 79 () Automated name-based View Maps
Barley - 5HS, Steptoe x Morex - 5HS, Steptoe x Morex Centromere locus 0 () Automated name-based View Maps
Wheat A - T. monococcum, G1777 x G2528 - Tm-Dubcovsky-1A Centromere locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-1A Centromere locus 56.5 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Centromere locus 0 () Automated name-based View Maps
Barley - Barley, BxGP - Hordeum-Laurie1-2H Centromere locus 58.6 () Automated name-based View Maps
Wheat ABD - Wheat, Gale - Ta-Gale-3A Centromere locus 0 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-1R Centromere locus 0 () Automated name-based View Maps
Wheat A - 5AS, T.m. G1777 x G2528 - 5AS, T.m. G1777 x G2528 Centromere locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-2D Centromere locus 128.5 () Automated name-based View Maps
Wheat ABD - Wheat genes - Triticum-Genes-5D Centromere locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-3D Centromere locus 77.5 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-7B Centromere locus 38.5 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-7A Centromere locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, CS x CS-CNN DS1A - Ta-Dubcovsky-1A Centromere locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-1D Centromere locus 51.3 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-5B Centromere locus 28.2 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-6R Centromere locus 0 () Automated name-based View Maps
Wheat ABD - Wheat genes - Triticum-Genes-1A Centromere locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-7A Centromere locus 121.9 () Automated name-based View Maps
Wheat ABD - Wheat genes - Triticum-Genes-5B Centromere locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Gale - Ta-Gale-2B Centromere locus 0 () Automated name-based View Maps
Wheat A - 5AS, T.m. G3116 x DV92 - 5AS, T.m. G3116 x DV92 Centromere locus 0 () Automated name-based View Maps
Wheat ABD - Wheat genes - Triticum-Genes-2B Centromere locus 0 () Automated name-based View Maps
Wheat ABD - 1BS, CS x CNN - 1BS, CS x CNN Centromere locus 0 () Automated name-based View Maps
Wheat ABD - Wheat genes - Triticum-Genes-1B Centromere locus 0 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-4A Centromere locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Gale - Ta-Gale-3B Centromere locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Gale - Ta-Gale-7D Centromere locus 0 () Automated name-based View Maps
Barley - Barley, physical - Hordeum-Physical-RFLP-3H Centromere locus 69.4 () Automated name-based View Maps
Wheat ABD - Wheat, Gale - Ta-Gale-7A Centromere locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-6B Centromere locus 0 () Automated name-based View Maps
Wheat ABD - Wheat genes - Triticum-Genes-4A Centromere locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-4B Centromere locus 19 () Automated name-based View Maps
Wheat ABD - Wheat genes - Triticum-Genes-3B Centromere locus 0 () Automated name-based View Maps
Barley - Barley, IxT - Hordeum-Laurie5-2H Centromere locus 59 () Automated name-based View Maps
Wheat ABD - Wheat genes - Triticum-Genes-6B Centromere locus 0 () Automated name-based View Maps
Wheat ABD - Wheat genes - Triticum-Genes-7D Centromere locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Gale - Ta-Gale-1D Centromere locus 0 () Automated name-based View Maps
Wheat ABD - Wheat genes - Triticum-Genes-6A Centromere locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Gale - Ta-Gale-4B Centromere locus 0 () Automated name-based View Maps
Wheat ABD - Triticeae consensus - Triticeae-Sorrells-3 Centromere locus 60.1 () Automated name-based View Maps
Wheat ABD - Wheat genes - Triticum-Genes-2D Centromere locus 0 () Automated name-based View Maps
Wheat AB - 1BS, durum x dicoccoides - 1BS, durum x dicoccoides Centromere locus 0 () Automated name-based View Maps
Wheat A - 1AS, T.m. G1777 x G2528 - 1AS, T.m. G1777 x G2528 Centromere locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Gale - Ta-Gale-5A Centromere locus 0 () Automated name-based View Maps
Barley - Barley genes - Hordeum-Genes-4H Centromere locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-5D Centromere locus 12.2 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-3R Centromere locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-4D Centromere locus 52.2 () Automated name-based View Maps
Barley - Barley, physical - Hordeum-Physical-RFLP-5H Centromere locus 38.9 () Automated name-based View Maps
Wheat ABD - Wheat genes - Triticum-Genes-2A Centromere locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Gale - Ta-Gale-4A Centromere locus 0 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-5R Centromere locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-3A Centromere locus 58 () Automated name-based View Maps
Wheat ABD - Wheat, Gale - Ta-Gale-6B Centromere locus 0 () Automated name-based View Maps
Wheat ABD - Wheat genes - Triticum-Genes-5A Centromere locus 0 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-2A Centromere locus 0 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-5A Centromere locus 0 () Automated name-based View Maps
Xpsr100-5D locus 3.2 No other positions
Xpsr115-5D locus 100.1 No other positions
Xpsr128-5D locus 4 Wheat ABD - Wheat, Physical, Group 5 - Ta-Physical-Sarma-5D Xpsr128-5D locus 0.3 () Automated name-based View Maps
Xpsr145-5D locus 78.9 Wheat ABD - Wheat, Physical, Group 5 - Ta-Physical-Sarma-5D Xpsr145-5D locus 0.88 () Automated name-based View Maps
Xpsr150-5D locus 27.5 No other positions
Xpsr109-5D locus 0.9 No other positions
Xpsr912-5D locus 17.7 No other positions
Xpsr946-5D locus -5.3 No other positions
Xpsr170-5D locus -32.1 No other positions
Xpsr580-5D locus 112.7 Wheat ABD - Wheat, Forno x Oberkulmer - Triticum-FxO-5DL Xpsr580-5D locus 72 () Automated name-based View Maps
Xpsr118-5D locus -0.6 No other positions
Xpsr326-5D locus -7 Wheat ABD - Wheat, Physical, Group 5 - Ta-Physical-Sarma-5D Xpsr326-5D locus -0.89 () Automated name-based View Maps
Xpsr628-5D locus -2.3 No other positions
Xpsr929-5D locus -0.3 No other positions
Xksu8-5D locus 22.7 No other positions
Xksu26-5D locus 0.7 No other positions
Xpsr79-5D locus 77.9 No other positions
Xpsr360-5D locus 2.1 No other positions
Xpsr370-5D locus 94.7 No other positions
Xpsr426-5D locus 64.7 No other positions
Xpsr574-5D locus 10.9 Wheat ABD - Wheat, Physical, Group 5 - Ta-Physical-Sarma-5D Xpsr574-5D locus 0.3 () Automated name-based View Maps
Xpsr637-5D locus 39.9 No other positions
Xpsr906-5D locus 2.9 Wheat ABD - Wheat, Forno x Oberkulmer - Triticum-FxO-5DL Xpsr906-5D locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, Group 5 - Ta-Physical-Sarma-5D Xpsr906-5D locus 0.3 () Automated name-based View Maps
Xpsr911-5D locus 35 Wheat ABD - Wheat, Physical, Group 5 - Ta-Physical-Sarma-5D Xpsr911-5D locus 0.67 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.