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Map Set Wheat ABD-Wheat, Physical
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Map Details

Map Type: Cytogenetic [ View Map Type Info ]
Map Set Name: Wheat ABD - Wheat, Physical [ View Map Set Info ]
Map Name: Ta-Physical-Gill-2D
Map Start: -4.4
Map Stop: 5.7
Features by Type:
22 baccontig
9 breakpoint
10 breakpointinterval
16 chromband
29 locus
86 Total

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Items 1 to 25 of 86.       of 4 | Next
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2D
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Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
XksuD22 locus 4.98 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-2A XksuD22 locus 87 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2ABD XksuD22 locus 81 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-2A XksuD22 locus 27.2 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-2B XksuD22 locus 74 () Automated name-based, Automated name-based View Maps
Wheat D - T.tauschii, Appels - Tt-Appels-2D XksuD22 locus 21.3 () Automated name-based, Automated name-based View Maps
XksuD8 locus 3.58 Wheat D - T.tauschii, Appels - Tt-Appels-2D XksuD8 locus 14.5 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2ABD XksuD8 locus 70 () Automated name-based View Maps
XksuE16 locus 4.98 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2ABD XksuE16 locus 81 () Automated name-based View Maps
Wheat D - T.tauschii, Appels - Tt-Appels-2D XksuE16 locus 19 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-2A XksuE16 locus 84 () Automated name-based, Automated name-based View Maps
XksuH16 locus 4.98 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-2A XksuH16 locus 112 () Automated name-based, Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-2A XksuH16 locus 76.3 () Automated name-based, Automated name-based View Maps
Wheat D - T.tauschii, Appels - Tt-Appels-2D XksuH16 locus 26.05 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2ABD XksuH16 locus 93 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-2D XksuH16 locus 121 () Automated name-based, Automated name-based View Maps
XksuH9 locus 4.98 Wheat D - T.tauschii, Appels - Tt-Appels-2D XksuH9 locus 27.45 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-7A XksuH9 locus 77 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-2D XksuH9 locus 113 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2ABD XksuH9 locus 95 () Automated name-based View Maps
Xpsr101 locus 0.83 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2ABD Xpsr101 locus 17 () Automated name-based View Maps
Wheat D - T.tauschii, Appels - Tt-Appels-4D Xpsr101 locus 7.35 () Automated name-based, Automated name-based View Maps
Xpsr112 locus 0.83 Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-2R Xpsr112 locus 72.6 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2ABD Xpsr112 locus 17 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr112 locus 0 () Automated name-based, Automated name-based View Maps
Wheat D - T.tauschii, Appels - Tt-Appels-2D Xpsr112 locus 7 () Automated name-based, Automated name-based View Maps
Xpsr131 locus -3.08 Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xpsr131 locus 45 () Automated name-based, Automated name-based View Maps
Wheat D - T.tauschii, Appels - Tt-Appels-2D Xpsr131 locus 7 () Automated name-based, Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_16 Xpsr131 locus 109.5 (cM) Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-2 Xpsr131 locus 43.9 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2ABD Xpsr131 locus -64 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr131 locus -5.3 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-2R Xpsr131 locus 67.5 () Automated name-based, Automated name-based View Maps
Xpsr109 locus -3.08 Barley - Barley, CxHs - Hordeum-Laurie2-2H Xpsr109 locus 19.5 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr109 locus -43.2 () Automated name-based, Automated name-based View Maps
Barley - Barley, BxGP - Hordeum-Laurie1-2H Xpsr109 locus 20.1 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-2R Xpsr109 locus 18.1 () Automated name-based, Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xpsr109 locus 45 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-1R Xpsr109 locus 73.1 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-1R Xpsr109 locus -2.1 () Automated name-based, Automated name-based View Maps
Xpsr102 locus 2.78 Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr102 locus 2.3 () Automated name-based, Automated name-based View Maps
Barley - Barley, CxHs - Hordeum-Laurie2-2H Xpsr102 locus 86.1 () Automated name-based, Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-2 Xpsr102 locus 49.7 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-2R Xpsr102 locus 75.3 () Automated name-based, Automated name-based View Maps
Barley - Barley, BxGP - Hordeum-Laurie1-2H Xpsr102 locus 78.1 () Automated name-based, Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-2R Xpsr102 locus 48.4 () Automated name-based, Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xpsr102 locus 58.9 () Automated name-based, Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-2A Xpsr102 locus 4.2 () Automated name-based, Automated name-based View Maps
Rye - Rye, Hannover - Secale-Wricke-2R Xpsr102 locus 94.4 () Automated name-based, Automated name-based View Maps
Xpsr107 locus -1.67 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-2A Xpsr107 locus 59 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr107 locus 0 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-2R Xpsr107 locus 72.6 () Automated name-based, Automated name-based View Maps
Rye - Rye, Hannover - Secale-Wricke-2R Xpsr107 locus 85.7 () Automated name-based, Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-2 Xpsr107 locus 3.1 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2ABD Xpsr107 locus -35 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xpsr107 locus 2.9 () Automated name-based, Automated name-based View Maps
Xpsr388 locus 2.78 Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr388 locus 0.8 () Automated name-based, Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xpsr388 locus 56 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2ABD Xpsr388 locus 47 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-2A Xpsr388 locus 63 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-2R Xpsr388 locus 73.7 () Automated name-based, Automated name-based View Maps
Xpsr666 locus -3.08 Rye - Rye, Hannover - Secale-Wricke-2R Xpsr666 locus 0 () Automated name-based, Automated name-based View Maps
Barley - Barley, BxGP - Hordeum-Laurie1-2H Xpsr666 locus 21.8 () Automated name-based, Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-2H Xpsr666 locus -42.6 () Automated name-based, Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-2 Xpsr666 locus 5.4 () Automated name-based, Automated name-based View Maps
Barley - Barley, IxT - Hordeum-Laurie5-2H Xpsr666 locus 17.7 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr666 locus -43.2 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2ABD Xpsr666 locus -92 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-2R Xpsr666 locus 3.9 () Automated name-based, Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xpsr666 locus 46.5 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-2R Xpsr666 locus 18.1 () Automated name-based, Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_13 Xpsr666 locus 28 (cM) Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-2A Xpsr666 locus -31.8 () Automated name-based, Automated name-based View Maps
Xwg645 locus 4.98 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-5-30 Xwg645 locus 22 () Automated name-based, Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-2H Xwg645 locus 120.6 () Automated name-based, Automated name-based View Maps
Barley - Barley, CxHs - Hordeum-Laurie2-2H Xwg645 locus 181.2 () Automated name-based, Automated name-based View Maps
Barley - H. bulbosum, PB1 x PB11 - Hbulbosum-PB1xPB11-2 Xwg645 locus 117 () Automated name-based, Automated name-based View Maps
Barley - Barley, BxGP - Hordeum-Laurie1-2H Xwg645 locus 166.6 () Automated name-based, Automated name-based View Maps
Oat - Oat-2002-KxO_Pal - Oat-2002-KxO-Pal_30 Xwg645 locus 8.54 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2ABD Xwg645 locus 95 () Automated name-based View Maps
Oat - Oat, KxO/QTL - Oat-KxO/Q-30 Xwg645 locus 2.9 () Automated name-based, Automated name-based View Maps
Barley - Barley, TxB - Hordeum-Laurie4-2H Xwg645 locus 82.8 () Automated name-based, Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-30 Xwg645 locus 2.9 () Automated name-based, Automated name-based View Maps
Xcdo405 locus -3.08 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2ABD Xcdo405 locus -64 () Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-6 Xcdo405 locus 53.4 () Automated name-based, Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-8 Xcdo405 locus 0 () Automated name-based, Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-6R Xcdo405 locus 53.3 () Automated name-based, Automated name-based View Maps
Oat - Oat, KxO/QTL - Oat-KxO/Q-8 Xcdo405 locus 0 () Automated name-based, Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_25 Xcdo405 locus 17 (cM) Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-8 Xcdo405 locus 12 () Automated name-based, Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_8 Xcdo405 locus 8.75 (cM) Automated name-based View Maps
Barley - H. bulbosum, PB1 x PB11 - Hbulbosum-PB1xPB11-2 Xcdo405 locus 52 () Automated name-based, Automated name-based View Maps
XksuF43 locus 2.78 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-6D XksuF43 locus -3.05 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2ABD XksuF43 locus 54 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-1ABD XksuF43 locus -86 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-1D XksuF43 locus -2.59 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-6ABD XksuF43 locus -86 () Automated name-based View Maps
Xcdo64 locus -3.08 Oat - Oat-2001-KxM-QTL - Oat-2001-KxM-QTL_14 Xcdo64 locus 0 (cM) Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-2A Xcdo64 locus -15.6 () Automated name-based, Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-14 Xcdo64 locus 13.6 () Automated name-based, Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-F Xcdo64 locus 55.3 () Automated name-based, Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO14 Xcdo64 locus 21.18 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2ABD Xcdo64 locus -64 () Automated name-based View Maps
Xcdo783 locus -3.08 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2ABD Xcdo783 locus -92 () Automated name-based View Maps
Rye - Rye, ExR - Secale-ExR-7 Xcdo783 locus 49.9 () Automated name-based, Automated name-based View Maps
Oat - Oat, D526 x Lang - Oat, D526 x Lang Xcdo783 locus 0.2 () Automated name-based, Automated name-based View Maps
XksuF19 locus -3.08 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2ABD XksuF19 locus -52 () Automated name-based View Maps
Xbcd348 locus -3.08 Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-B Xbcd348 locus 5.8 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2ABD Xbcd348 locus -92 () Automated name-based View Maps
Barley - H. bulbosum, PB1 x PB11 - Hbulbosum-PB1xPB11-6 Xbcd348 locus 65 () Automated name-based, Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_14 Xbcd348 locus 4.5 (cM) Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-2A Xbcd348 locus -72.2 () Automated name-based, Automated name-based View Maps
Xbcd855 locus -3.08 Oat - Oat-2007-OxT-PcQTL - Oat-2007-OxT_6 Xbcd855 locus 17 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2ABD Xbcd855 locus -52 () Automated name-based View Maps
XksuG30 locus 2.78 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2ABD XksuG30 locus 54 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-6B XksuG30 locus 146 () Automated name-based, Automated name-based View Maps
XksuF15 locus 3.58 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2ABD XksuF15 locus 73 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-2B XksuF15 locus 88 () Automated name-based, Automated name-based View Maps
XksuF2 locus 4.98 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2ABD XksuF2 locus 81 () Automated name-based View Maps
XksuG5 locus 4.98 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2ABD XksuG5 locus 84 () Automated name-based View Maps

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