*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat ABD-Wheat, Physical
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Ta-Physical-Gill-5ABD
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
breakpoint
breakpointinterval
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Cytogenetic [ View Map Type Info ]
Map Set Name: Wheat ABD - Wheat, Physical [ View Map Set Info ]
Map Name: Ta-Physical-Gill-5ABD
Map Start: -100
Map Stop: 100
Features by Type:
26 breakpoint
31 breakpointinterval
75 locus
132 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 132.       of 6 | Next
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xksu26 locus 31 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5D Xksu26 locus 2.78 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-5R Xksu26 locus 56.1 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-5R Xksu26 locus 0 () Automated name-based, Automated name-based View Maps
Wheat D - T.tauschii, Appels - Tt-Appels-5D Xksu26 locus 15.65 () Automated name-based, Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-5R Xksu26 locus 1.3 () Automated name-based, Automated name-based View Maps
Xpsr118 locus -26 Barley - Barley, IxT/QTL - Hordeum-IxT/Q-5H Xpsr118 locus -0.5 () Automated name-based, Automated name-based View Maps
Wheat A - 5AS, T.m. G1777 x G2528 - 5AS, T.m. G1777 x G2528 Xpsr118 locus -1.1 () Automated name-based, Automated name-based View Maps
Wheat D - T.tauschii, Appels - Tt-Appels-5D Xpsr118 locus 15.65 () Automated name-based, Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-5A Xpsr118 locus 0 () Automated name-based, Automated name-based View Maps
Barley - H. bulbosum, PB1 x PB11 - Hbulbosum-PB1xPB11-5 Xpsr118 locus 36 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5B Xpsr118 locus 49 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5D Xpsr118 locus -1.36 () Automated name-based View Maps
Xpsr128 locus 43 Barley - Barley, IxT/QTL - Hordeum-IxT/Q-5H Xpsr128 locus 37.8 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5A Xpsr128 locus 44 () Automated name-based, Automated name-based View Maps
Barley - H. bulbosum, PB1 x PB11 - Hbulbosum-PB1xPB11-5 Xpsr128 locus 40 () Automated name-based, Automated name-based View Maps
Wheat D - T.tauschii, Appels - Tt-Appels-5D Xpsr128 locus 17.6 () Automated name-based, Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_8 Xpsr128 locus 105.5 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5D Xpsr128 locus 2.78 () Automated name-based View Maps
Wheat A - 5AS, T.m. G1777 x G2528 - 5AS, T.m. G1777 x G2528 Xpsr128 locus 1.1 () Automated name-based, Automated name-based View Maps
Xwg114 locus 93 Wheat D - T.tauschii, Appels - Tt-Appels-4D Xwg114 locus 18 () Automated name-based, Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-5 Xwg114 locus 87.9 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-4D Xwg114 locus 4.94 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-5A Xwg114 locus 101.8 () Automated name-based, Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-5R Xwg114 locus 150.3 () Automated name-based, Automated name-based View Maps
Rye - Rye, ExR - Secale-ExR-5 Xwg114 locus 115.4 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-4ABD Xwg114 locus 93 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-5R Xwg114 locus 75.1 () Automated name-based, Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-F Xwg114 locus 28.6 () Automated name-based, Automated name-based View Maps
NOR locus -53 Wheat D - T.tauschii - Tt-Gill-5D NOR locus 159.5 () Automated name-based, Automated name-based View Maps
Barley - Barley, physical - Hordeum-Physical-RFLP-5H NOR locus 29 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5D NOR locus -2.28 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-6B Xnor-6B (Nor) locus 37.2 () Automated name-based, Automated name-based View Maps
Maize - Maize, TxCM - Zea-Ahn-6 NOR locus 0 () Automated name-based, Automated name-based View Maps
Xpsr115(Pk) locus 93 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5D Xpsr115(Pk) locus 5.14 () Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_31 Xpsr115(Pk) locus 138.5 (cM) Automated name-based View Maps
Xpsr370 locus 84 Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-5A Xpsr370 locus 97 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5D Xpsr370 locus 5.14 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-5R Xpsr370 locus 148 () Automated name-based, Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-5 Xpsr370 locus 78.6 () Automated name-based, Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-5R Xpsr370 locus 137.7 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-5R Xpsr370 locus 93.9 () Automated name-based, Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-5R Xpsr370 locus 69.5 () Automated name-based, Automated name-based View Maps
Xpsr580 locus 93 Rye - Rye_2009_consensus - Rye-2009-Consensus-7R Xpsr580 locus 21.6 () Automated name-based, Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-7R Xpsr580 locus 14.1 () Automated name-based, Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-7 Xpsr580 locus 13.7 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-7R Xpsr580 locus -42 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-7R Xpsr580 locus 30.6 () Automated name-based, Automated name-based View Maps
Xpsr637 locus 73 Rye - Rye, ExR - Secale-ExR-5 Xpsr637 locus 38.3 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5A Xpsr637 locus 52 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5D Xpsr637 locus 4.63 () Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_32 Xpsr637 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2007-OxT-PcQTL - Oat-2007-OxT_32 Xpsr637 locus 0 (cM) Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-5R Xpsr637 locus 31.7 () Automated name-based, Automated name-based View Maps
Xcdo400 locus 73 Oat - Oat-2000-KxO-Bgl - Oat-2000-KxO-Bgl_14 Xcdo400 locus 0 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5D Xcdo400 locus 4.81 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-14 Xcdo400 locus 22.5 () Automated name-based, Automated name-based View Maps
Diploid oat - Diploid Oat, AFLP - Avena-Yu-E Xcdo400 locus 593.4 () Automated name-based, Automated name-based View Maps
Oat - Oat-2000-KxM-Bgl - Oat-2000-KxM-Bgl_14 Xcdo400 locus 0 () Automated name-based, Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_11 Xcdo400 locus 16 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5B Xcdo400 locus 68 () Automated name-based, Automated name-based View Maps
Wheat S^l^ - Oat-2004-SxW-RGA - Oat-2004-SxW-RGA_AswBF Xcdo400 locus 131.79 (cM) Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO14 Xcdo400 locus 14.12 (cM) Automated name-based View Maps
Oat - Oat-2003-OxM-QTL1 - Oat-2003-OxM-QTL1_11 Xcdo400 locus 17.1 (cM) Automated name-based View Maps
Oat - Oat-2001-KxM-QTL - Oat-2001-KxM-QTL_14 Xcdo400 locus 24 (cM) Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-E Xcdo400 locus 110.6 () Automated name-based, Automated name-based View Maps
Xbcd450 locus 75 Diploid oat - Diploid Oat, AFLP - Avena-Yu-G Xbcd450 locus 393.3 () Automated name-based, Automated name-based View Maps
Barley - H. bulbosum, PB1 x PB11 - Hbulbosum-PB1xPB11-5 Xbcd450 locus 49 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5D Xbcd450 locus 5.14 () Automated name-based View Maps
Xpsr170 locus -63 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-3D Xpsr170 locus 2.94 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-3R Xpsr170 locus 70.1 () Automated name-based, Automated name-based View Maps
Barley - Barley, MxG - Hordeum-Laurie3-3H Xpsr170 locus 27.8 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-3ABD Xpsr170 locus 89 () Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-3H Xpsr170 locus 67.4 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-3R Xpsr170 locus 9.2 () Automated name-based, Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-3A Xpsr170 locus 25.3 () Automated name-based, Automated name-based View Maps
Xcdo1333 locus 93 Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-5A Xcdo1333 locus 86 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-4D Xcdo1333 locus 4.94 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-4ABD Xcdo1333 locus 91 () Automated name-based View Maps
Xcdo1312 locus 93 Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-5A Xcdo1312 locus 97.7 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-4ABD Xcdo1312 locus 91 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-4D Xcdo1312 locus 4.94 () Automated name-based View Maps
Xabg705 locus -66 Wheat A - 5AS, T.m. G3116 x DV92 - 5AS, T.m. G3116 x DV92 Xabg705 locus -7.8 () Automated name-based, Automated name-based View Maps
Barley - 5HS, Steptoe x Morex - 5HS, Steptoe x Morex Xabg705 locus -16.1 () Automated name-based, Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-5A Xabg705 locus -7.7 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5B Xabg705 locus 41 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5D Xabg705 locus -2.57 () Automated name-based View Maps
Xglk319 locus -53 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5D Xglk319 locus -2.28 () Automated name-based View Maps
XksuI26 locus -40 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5D XksuI26 locus -1.36 () Automated name-based View Maps
Xcdo1335 locus -40 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5D Xcdo1335 locus -1.36 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-30 Xcdo1335 locus 2.9 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5B Xcdo1335 locus 17 () Automated name-based, Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-F Xcdo1335 locus 55.3 () Automated name-based, Automated name-based View Maps
Xwg363 locus -26 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5D Xwg363 locus -1.36 () Automated name-based View Maps
Xcdo677 locus -40 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5D Xcdo677 locus -1.36 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-5A Xcdo677 locus 0 () Automated name-based, Automated name-based View Maps
Oat - Oat-1997-KxO-QTL - Oat-1997-KxO-QTL_UL.6 Xcdo677 locus 0 (cM) Automated name-based View Maps
XksuG44 locus 55 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5D XksuG44 locus 0.9 () Automated name-based View Maps
Xcdo57 locus 31 Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-E Xcdo57 locus 99.9 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5D Xcdo57 locus 0.9 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-7ABD Xcdo57 locus -53 () Automated name-based View Maps
XksuD16 locus 31 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5D XksuD16 locus 0.9 () Automated name-based View Maps
Xwg419 locus 29 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5D Xwg419 locus 0.9 () Automated name-based View Maps
Xcdo1049 locus 31 Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-F Xcdo1049 locus 64.3 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5D Xcdo1049 locus 0.9 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-5A Xcdo1049 locus 0 () Automated name-based, Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.