*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat ABD-Wheat, Physical
(Reference Set)
Wheat ABD-Wheat, Composite, 2004
Min.
Correspondences
Align Vertically
Stack
Maps Ta-Physical-Gill-5D Wheat-Composite2004-5B
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
baccontig
breakpoint
breakpointinterval
chromband
locus
qtl
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Cytogenetic [ View Map Type Info ]
Map Set Name: Wheat ABD - Wheat, Physical [ View Map Set Info ]
Map Name: Ta-Physical-Gill-5D
Map Start: -3.60
Map Stop: 6.80
Features by Type:
32 baccontig
14 breakpoint
15 breakpointinterval
14 chromband
69 locus
144 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 144.       of 6 | Next
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5D
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xksu26 locus 2.78 Rye - Rye_2009_consensus - Rye-2009-Consensus-5R Xksu26 locus 1.30 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-5R Xksu26 locus 0.00 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xksu26 locus 31.00 () Automated name-based View Maps
Wheat D - T.tauschii, Appels - Tt-Appels-5D Xksu26 locus 15.65 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-5R Xksu26 locus 56.10 () Automated name-based, Automated name-based View Maps
Xpsr118 locus -1.36 Barley - Barley, IxT/QTL - Hordeum-IxT/Q-5H Xpsr118 locus -0.50 () Automated name-based, Automated name-based View Maps
Wheat D - T.tauschii, Appels - Tt-Appels-5D Xpsr118 locus 15.65 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xpsr118 locus -26.00 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5B Xpsr118 locus 49.00 () Automated name-based, Automated name-based View Maps
Wheat A - 5AS, T.m. G1777 x G2528 - 5AS, T.m. G1777 x G2528 Xpsr118 locus -1.10 () Automated name-based, Automated name-based View Maps
Barley - H. bulbosum, PB1 x PB11 - Hbulbosum-PB1xPB11-5 Xpsr118 locus 36.00 () Automated name-based, Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-5A Xpsr118 locus 0.00 () Automated name-based, Automated name-based View Maps
Xpsr128 locus 2.78 Wheat D - T.tauschii, Appels - Tt-Appels-5D Xpsr128 locus 17.60 () Automated name-based, Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-5H Xpsr128 locus 37.80 () Automated name-based, Automated name-based View Maps
Barley - H. bulbosum, PB1 x PB11 - Hbulbosum-PB1xPB11-5 Xpsr128 locus 40.00 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xpsr128 locus 43.00 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5A Xpsr128 locus 44.00 () Automated name-based, Automated name-based View Maps
Wheat A - 5AS, T.m. G1777 x G2528 - 5AS, T.m. G1777 x G2528 Xpsr128 locus 1.10 () Automated name-based, Automated name-based View Maps
NOR locus -2.28 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD NOR locus -53.00 () Automated name-based View Maps
Maize - Maize, TxCM - Zea-Ahn-6 NOR locus 0.00 () Automated name-based, Automated name-based View Maps
Barley - Barley, physical - Hordeum-Physical-RFLP-5H NOR locus 29.00 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-6B Xnor-6B (Nor) locus 37.20 () Automated name-based, Automated name-based View Maps
Wheat D - T.tauschii - Tt-Gill-5D NOR locus 159.50 () Automated name-based, Automated name-based View Maps
Xpsr115(Pk) locus 5.14 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xpsr115(Pk) locus 93.00 () Automated name-based View Maps
Xpsr120 locus 4.81 Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-5A Xpsr120 locus 50.40 () Automated name-based, Automated name-based View Maps
Xpsr370 locus 5.14 Rye - Rye_2009_consensus - Rye-2009-Consensus-5R Xpsr370 locus 69.50 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xpsr370 locus 84.00 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-5A Xpsr370 locus 97.00 () Automated name-based, Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-5R Xpsr370 locus 137.70 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-5R Xpsr370 locus 93.90 () Automated name-based, Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-5 Xpsr370 locus 78.60 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-5R Xpsr370 locus 148.00 () Automated name-based, Automated name-based View Maps
Xpsr628 locus 0.90 Rye - Rye, Hannover - Secale-Wricke-5R Xpsr628 locus 5.40 () Automated name-based, Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-5A Xpsr628 locus 0.00 () Automated name-based, Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-5 Xpsr628 locus 58.50 () Automated name-based, Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-5R Xpsr628 locus 1.30 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-5R Xpsr628 locus 56.10 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-5R Xpsr628 locus 0.00 () Automated name-based, Automated name-based View Maps
Rye - Rye, ExR - Secale-ExR-5 Xpsr628 locus 6.20 () Automated name-based, Automated name-based View Maps
Xpsr637 locus 4.63 Rye - Rye, ExR - Secale-ExR-5 Xpsr637 locus 38.30 () Automated name-based, Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-5R Xpsr637 locus 31.70 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5A Xpsr637 locus 52.00 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xpsr637 locus 73.00 () Automated name-based View Maps
Xcdo400 locus 4.81 Oat - Oat-2000-KxM-Bgl - Oat-2000-KxM-Bgl_14 Xcdo400 locus 0.00 () Automated name-based, Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-E Xcdo400 locus 110.60 () Automated name-based, Automated name-based View Maps
Oat - Oat-2000-KxO-Bgl - Oat-2000-KxO-Bgl_14 Xcdo400 locus 0.00 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xcdo400 locus 73.00 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5B Xcdo400 locus 68.00 () Automated name-based, Automated name-based View Maps
Diploid oat - Diploid Oat, AFLP - Avena-Yu-E Xcdo400 locus 593.40 () Automated name-based, Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-14 Xcdo400 locus 22.50 () Automated name-based, Automated name-based View Maps
Xbcd450 locus 5.14 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xbcd450 locus 75.00 () Automated name-based View Maps
Barley - H. bulbosum, PB1 x PB11 - Hbulbosum-PB1xPB11-5 Xbcd450 locus 49.00 () Automated name-based, Automated name-based View Maps
Diploid oat - Diploid Oat, AFLP - Avena-Yu-G Xbcd450 locus 393.30 () Automated name-based, Automated name-based View Maps
Xcdo388 locus 5.14 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-6A Xcdo388 locus 112.00 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-1ABD Xcdo388 locus -86.00 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-1D Xcdo388 locus -2.59 () Automated name-based View Maps
Xbcd508 locus 4.23 Rye - Rye, ExR - Secale-ExR-5 Xbcd508 locus 31.10 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-1D Xbcd508 locus 4.46 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5A Xbcd508 locus 38.00 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-1ABD Xbcd508 locus 86.00 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-5R Xbcd508 locus 20.40 () Automated name-based, Automated name-based View Maps
Gsp locus -3.19 Barley - Barley, Pilot OPA1, Consensus - Hordeum-PilotOPA1-5H Gsp locus 2.21 () Automated name-based, Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SNP - Hordeum-StMo-SNP-5H Gsp locus 2.07 () Automated name-based, Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-5H Gsp locus -0.35 () Automated name-based, Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-5H Gsp locus 0.00 () Automated name-based, Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-5H Gsp locus -0.35 () Automated name-based, Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H Gsp locus 3.14 () Automated name-based, Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-5 Gsp locus -0.35 () Automated name-based, Automated name-based View Maps
Xabg705 locus -2.57 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xabg705 locus -66.00 () Automated name-based View Maps
Barley - 5HS, Steptoe x Morex - 5HS, Steptoe x Morex Xabg705 locus -16.10 () Automated name-based, Automated name-based View Maps
Wheat A - 5AS, T.m. G3116 x DV92 - 5AS, T.m. G3116 x DV92 Xabg705 locus -7.80 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5B Xabg705 locus 41.00 () Automated name-based, Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-5A Xabg705 locus -7.70 () Automated name-based, Automated name-based View Maps
Xglk319 locus -2.28 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xglk319 locus -53.00 () Automated name-based View Maps
XksuI26 locus -1.36 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD XksuI26 locus -40.00 () Automated name-based View Maps
Xcdo1335 locus -1.36 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xcdo1335 locus -40.00 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-30 Xcdo1335 locus 2.90 () Automated name-based, Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-F Xcdo1335 locus 55.30 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5B Xcdo1335 locus 17.00 () Automated name-based, Automated name-based View Maps
Xwg363 locus -1.36 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xwg363 locus -26.00 () Automated name-based View Maps
Xcdo677 locus -1.36 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xcdo677 locus -40.00 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-5A Xcdo677 locus 0.00 () Automated name-based, Automated name-based View Maps
XksuA1 locus 0.90 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5B XksuA1 locus 55.00 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-7ABD XksuA1 locus -81.00 () Automated name-based View Maps
XksuA3 locus 0.90 No other positions
XksuG44 locus 0.90 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD XksuG44 locus 55.00 () Automated name-based View Maps
Xcdo57 locus 0.90 Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-E Xcdo57 locus 99.90 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xcdo57 locus 31.00 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-7ABD Xcdo57 locus -53.00 () Automated name-based View Maps
XksuD16 locus 0.90 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD XksuD16 locus 31.00 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.