*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat ABD-Wheat, Physical
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Ta-Physical-Gill-5D
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
baccontig
breakpoint
breakpointinterval
chromband
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Cytogenetic [ View Map Type Info ]
Map Set Name: Wheat ABD - Wheat, Physical [ View Map Set Info ]
Map Name: Ta-Physical-Gill-5D
Map Start: -3.6
Map Stop: 6.8
Features by Type:
32 baccontig
14 breakpoint
15 breakpointinterval
14 chromband
69 locus
144 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 26 to 50 of 144.       Previous | of 6 | Next
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5D
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xwg419 locus 0.9 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xwg419 locus 29 () Automated name-based View Maps
Xcdo1049 locus 0.9 Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-5A Xcdo1049 locus 0 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xcdo1049 locus 31 () Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-F Xcdo1049 locus 64.3 () Automated name-based, Automated name-based View Maps
Xwg909 locus 0.9 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xwg909 locus 29 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5B Xwg909 locus 53 () Automated name-based, Automated name-based View Maps
XksuD42 locus 3.51 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD XksuD42 locus 29 () Automated name-based View Maps
XksuM2 locus 0.9 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD XksuM2 locus 29 () Automated name-based View Maps
Xbcd204 locus 1.98 Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-5A Xbcd204 locus 0 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xbcd204 locus 33 () Automated name-based View Maps
Xbcd508b locus 1.98 No other positions
Xcdo388b locus 1.98 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1B Xcdo388b locus 67 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1D Xcdo388b locus 6 () Automated name-based, Automated name-based View Maps
Xbcd1087 locus 2.78 Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-E Xbcd1087 locus 84.4 () Automated name-based, Automated name-based View Maps
Oat - Oat-2007-OxT-PcQTL - Oat-2007-OxT_2 Xbcd1087 locus 19.2 (cM) Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_2 Xbcd1087 locus 16 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xbcd1087 locus 47 () Automated name-based View Maps
Xbcd157 locus 2.78 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xbcd157 locus 47 () Automated name-based View Maps
XksuD30 locus 2.78 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD XksuD30 locus 35 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5D XksuD30 locus 20 () Automated name-based, Automated name-based View Maps
Xwg889 locus 3.51 Barley - Barley, IxT/QTL - Hordeum-IxT/Q-5H Xwg889 locus 25 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xwg889 locus 38 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-5A Xwg889 locus 0.7 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5B Xwg889 locus 52 () Automated name-based, Automated name-based View Maps
XksuG7 locus 2.78 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-7ABD XksuG7 locus 76 () Automated name-based View Maps
Xcdo412 locus 3.51 Oat - Oat-2004-OxM-QTL4 - Oat-2004-OxM-QTL4_26 Xcdo412 locus 9.6 (cM) Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-E Xcdo412 locus 94.7 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5B Xcdo412 locus 56 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xcdo412 locus 53 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_26 Xcdo412 locus 9 (cM) Automated name-based View Maps
XksuG12 locus 3.51 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-7B XksuG12 locus 52 () Automated name-based, Automated name-based View Maps
XksuS1 locus 3.51 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD XksuS1 locus 53 () Automated name-based View Maps
Xksu8 locus 3.51 Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-5R Xksu8 locus 71.2 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xksu8 locus 53 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-5R Xksu8 locus 11.4 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-5R Xksu8 locus 13.2 () Automated name-based, Automated name-based View Maps
Xcdo786 locus 3.51 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xcdo786 locus 55 () Automated name-based View Maps
Xwg564 locus 3.51 No other positions
Xbcd351 locus 4.23 Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-E Xbcd351 locus 105.8 () Automated name-based, Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-5R Xbcd351 locus 6.3 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5B Xbcd351 locus 60 () Automated name-based, Automated name-based View Maps
Rye - Rye, ExR - Secale-ExR-5 Xbcd351 locus 10.1 () Automated name-based, Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-5A Xbcd351 locus 27.1 () Automated name-based, Automated name-based View Maps
Xglk614 locus 4.23 No other positions
Xwg530 locus 4.23 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xwg530 locus 55 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-5A Xwg530 locus 29.6 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5B Xwg530 locus 60 () Automated name-based, Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-5H Xwg530 locus 12.2 () Automated name-based, Automated name-based View Maps
Xwg1026 locus 4.63 Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-5A Xwg1026 locus 50.4 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xwg1026 locus 73 () Automated name-based View Maps
XksuG57 locus 4.63 No other positions
Xglk644 locus 4.81 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xglk644 locus 58 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.