*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat ABD-Wheat, Physical
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Ta-Physical-Gill-6ABD
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
breakpoint
breakpointinterval
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Cytogenetic [ View Map Type Info ]
Map Set Name: Wheat ABD - Wheat, Physical [ View Map Set Info ]
Map Name: Ta-Physical-Gill-6ABD
Map Start: -100
Map Stop: 100
Features by Type:
20 breakpoint
21 breakpointinterval
36 locus
77 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 77.       of 4 | Next
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-6ABD
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xpsr154 locus 95 Barley - H. bulbosum, PB1 x PB11 - Hbulbosum-PB1xPB11-6 Xpsr154 locus 75 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-6D Xpsr154 locus 3.46 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-6R Xpsr154 locus 61.4 () Automated name-based, Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-6H Xpsr154 locus 72.8 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-6R Xpsr154 locus 16.5 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-6R Xpsr154 locus 85.6 () Automated name-based, Automated name-based View Maps
Wheat D - T.tauschii, Appels - Tt-Appels-6D Xpsr154 locus 25.3 () Automated name-based, Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-6A Xpsr154 locus 27.9 () Automated name-based, Automated name-based View Maps
Xtam30 locus 95 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-6D Xtam30 locus 3.46 () Automated name-based View Maps
Wheat D - T.tauschii, Appels - Tt-Appels-6D Xtam30 locus 29.5 () Automated name-based, Automated name-based View Maps
Xpsr149 locus 86 Rye - Rye, P87 x P105, update - Secale-PxP-update-6R Xpsr149 locus 47.9 () Automated name-based, Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-6 Xpsr149 locus 47.9 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-6R Xpsr149 locus 75 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-6R Xpsr149 locus 0 () Automated name-based, Automated name-based View Maps
XksuF43 locus -86 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2D XksuF43 locus 2.78 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-1ABD XksuF43 locus -86 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-1D XksuF43 locus -2.59 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-6D XksuF43 locus -3.05 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2ABD XksuF43 locus 54 () Automated name-based View Maps
XksuE14 locus 95 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-3ABD XksuE14 locus 69 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-3D XksuE14 locus 2.94 () Automated name-based View Maps
XksuG48 locus -86 Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-6A XksuG48 locus -27.1 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-6D XksuG48 locus -3.05 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-3D XksuG48 locus 2.94 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-6A XksuG48 locus 34 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-3ABD XksuG48 locus 82 () Automated name-based View Maps
Xtam31 locus -52 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-6D Xtam31 locus 87 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-6D Xtam31 locus -3.05 () Automated name-based View Maps
XksuI28 locus -86 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-6D XksuI28 locus -3.05 () Automated name-based View Maps
XksuG8 locus -62 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-6D XksuG8 locus -3.05 () Automated name-based View Maps
Xwg223 locus 36 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-6D Xwg223 locus 1.83 () Automated name-based View Maps
XksuF24 locus 65 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-6D XksuF24 locus 1.83 () Automated name-based View Maps
Xwg933 locus 46 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-6D Xwg933 locus 1.83 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-6D Xwg933 locus 92 () Automated name-based, Automated name-based View Maps
Xpsr142 locus 46 Rye - Rye, ExR - Secale-ExR-6 Xpsr142 locus 11.5 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-6D Xpsr142 locus 1.83 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-6R Xpsr142 locus 79 () Automated name-based, Automated name-based View Maps
XksuG58 locus 41 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-6D XksuG58 locus 1.83 () Automated name-based View Maps
XksuM11 locus 95 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-6D XksuM11 locus 3.46 () Automated name-based View Maps
Xtam21 locus 95 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-6D Xtam21 locus 3.46 () Automated name-based View Maps
Xttu1937(Wsip16)[XDhn3] locus 95 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-6D Xttu1937(Wsip16)[XDhn3] locus 3.46 () Automated name-based View Maps
XksuM75 locus 95 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-6D XksuM75 locus 3.46 () Automated name-based View Maps
XksuD12 locus 95 Rye - Rye, P87 x P105, update - Secale-PxP-update-6R XksuD12 locus 80.2 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-6D XksuD12 locus 3.46 () Automated name-based View Maps
Xpsr134 locus 95 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-6D Xpsr134 locus 3.46 () Automated name-based View Maps
Wheat D - T.tauschii - Tt-Gill-6D PSR134 locus 401.7 () Automated name-based, Automated name-based View Maps
XksuF37 locus 95 Rye - Rye_2009_consensus - Rye-2009-Consensus-6R XksuF37 locus 70.9 () Automated name-based, Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-6R XksuF37 locus 77.4 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-2B XksuF37 locus 78 () Automated name-based, Automated name-based View Maps
XksuH4.2 locus -62 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-6A XksuH4.2 locus 48 () Automated name-based, Automated name-based View Maps
XksuH4.1 locus -86 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-6B XksuH4.1 locus 94 () Automated name-based, Automated name-based View Maps
XksuD17.2 locus 46 No other positions
XksuD17.1 locus 7.5 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.