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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat ABD-Wheat, Physical, Group 5
(Reference Set)
Min.
Correspondences
Align Vertically
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Maps Ta-Physical-Sarma-5A
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hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
breakpoint
breakpointinterval
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Wheat ABD - Wheat, Physical, Group 5 [ View Map Set Info ]
Map Name: Ta-Physical-Sarma-5A
Map Start: -1
Map Stop: 1
Features by Type:
13 breakpoint
13 breakpointinterval
30 locus
56 Total

Map Features

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Items 26 to 50 of 56.       Previous | of 3 | Next
Wheat ABD - Wheat, Physical, Group 5 - Ta-Physical-Sarma-5A
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xrgr3226-5A locus 0.73 No other positions
Xrgr2311-5A locus 0.73 No other positions
Xrgr2443-5A locus 0.73 No other positions
Xrgr2404-5A locus 0.73 No other positions
Xbcd454-5A locus 0.87 No other positions
5AS3-0.75-0.98 breakpointinterval -0.98 - -0.75 Wheat ABD - Wheat deletion-line bins - CS-deletions-5A 5AS3-0.75-0.98 breakpointinterval -0.98 - -0.75 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_5A 5AS3-0.75-0.98 breakpointinterval -0.98 - -0.75 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_5A 5AS3-0.75-0.98 breakpointinterval -0.98 - -0.75 () Automated name-based View Maps
5AL23-0.87-1.00 breakpointinterval 0.87 - 1 Wheat ABD - Wheat deletion-line bins - CS-deletions-5A 5AL23-0.87-1.00 breakpointinterval 0.87 - 1 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_5A 5AL23-0.87-1.00 breakpointinterval 0.87 - 1 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_5A 5AL23-0.87-1.00 breakpointinterval 0.87 - 1 () Automated name-based View Maps
5AS1-0.40-0.75 breakpointinterval -0.75 - -0.4 Wheat ABD - Wheat deletion-line bins - CS-deletions-5A 5AS1-0.40-0.75 breakpointinterval -0.75 - -0.4 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_5A 5AS1-0.40-0.75 breakpointinterval -0.75 - -0.4 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_5A 5AS1-0.40-0.75 breakpointinterval -0.75 - -0.4 () Automated name-based View Maps
C-5AL10-0.56 breakpointinterval 0 - 0.56 No other positions
5AL10-0.56-0.64 breakpointinterval 0.56 - 0.64 No other positions
5AL8-0.64-0.67 breakpointinterval 0.64 - 0.67 No other positions
5AL15-0.67-0.68 breakpointinterval 0.67 - 0.68 No other positions
5AL6-0.68-0.78 breakpointinterval 0.68 - 0.78 No other positions
5AL17-0.78-0.82 breakpointinterval 0.78 - 0.82 No other positions
5AL7-0.87-0.87 breakpointinterval 0.87 No other positions
5AS7-0.98-1.00 breakpointinterval -1 - -0.98 No other positions
C-5AS1-0.40 breakpointinterval -0.4 - 0 Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_5A C-5AS1-0.40 breakpointinterval -0.4 - 0 () Automated name-based View Maps
Wheat ABD - Wheat deletion-line bins - CS-deletions-5A C-5AS1-0.40 breakpointinterval -0.4 - 0 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_5A C-5AS1-0.40 breakpointinterval -0.4 - 0 () Automated name-based View Maps
5AL20-0.82-0.87 breakpointinterval 0.82 - 0.87 No other positions
Cent breakpoint 0 Wheat ABD - Wheat, Physical, Group 5 - Ta-Physical-Sarma-5B Cent breakpoint 0 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, Group 5 - Ta-Physical-Sarma-5D Cent breakpoint 0 () Automated name-based View Maps
5AS-2 breakpoint -1 Wheat ABD - Wheat, Physical, R Genes - Ta-Physical-RGenes-5A 5AS-2 breakpoint -100 () Automated name-based View Maps
5AS-7 breakpoint -0.98 Wheat ABD - Wheat, Physical, R Genes - Ta-Physical-RGenes-5A 5AS-7 breakpoint -98 () Automated name-based View Maps
5AS-3 breakpoint -0.75 Wheat ABD - Wheat, Physical, R Genes - Ta-Physical-RGenes-5A 5AS-3 breakpoint -75 () Automated name-based View Maps
5AS-1 breakpoint -0.4 Wheat ABD - Wheat, Physical, R Genes - Ta-Physical-RGenes-5A 5AS-1 breakpoint -40 () Automated name-based View Maps
5AL-10 breakpoint 0.56 Wheat ABD - Wheat, Physical, R Genes - Ta-Physical-RGenes-5A 5AL-10 breakpoint 57 () Automated name-based View Maps
5AL-15 breakpoint 0.67 Wheat ABD - Wheat, Physical, R Genes - Ta-Physical-RGenes-5A 5AL-15 breakpoint 67 () Automated name-based View Maps

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