*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat ABD-Wheat, Physical, Group 5
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Ta-Physical-Sarma-5A
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
breakpoint
breakpointinterval
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Wheat ABD - Wheat, Physical, Group 5 [ View Map Set Info ]
Map Name: Ta-Physical-Sarma-5A
Map Start: -1
Map Stop: 1
Features by Type:
13 breakpoint
13 breakpointinterval
30 locus
56 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 56.       of 3 | Next
Wheat ABD - Wheat, Physical, Group 5 - Ta-Physical-Sarma-5A
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xbcd450-5A locus 0.73 Wheat ABD - 5AL, CS q deletions, physical - 5AL, q deletions Xbcd450-5A locus 51 () Automated name-based View Maps
Xpsr574-5A locus 0.6 Wheat ABD - Wheat, Chinese Spring x SQ1 - CS/SQ1-5A Xpsr574-5A locus 41 () Automated name-based View Maps
Wheat ABD - Wheat, Gale - Ta-Gale-5A Xpsr574-5A locus 10.9 () Automated name-based View Maps
Xpsr911-5A locus 0.66 Wheat AB - T. turgidum, Messapia x dicoccoides - Tturgidum-MxM-5A Xpsr911-5A locus 55.9 () Automated name-based View Maps
Wheat ABD - Wheat, Forno x Oberkulmer - Triticum-FxO-5A Xpsr911-5A locus 103 () Automated name-based View Maps
Wheat AB - T. turgidum, Messapia x dicoccoides, SSR - Tturgidum-SSR-5A Xpsr911-5A locus 49.1 () Automated name-based View Maps
Wheat ABD - Wheat, Chinese Spring x SQ1 - CS/SQ1-5A Xpsr911-5A locus 84.1 () Automated name-based View Maps
Wheat AB - T. turgidum, Messapia x dicoccoides, AFLP - Tturgidum-MxM-AFLP-5A Xpsr911-5A locus 134.6 () Automated name-based View Maps
Wheat ABD - Wheat, Gale - Ta-Gale-5A Xpsr911-5A locus 35 () Automated name-based View Maps
Xbcd926-5A locus 0.28 Wheat AB - T. turgidum, JK x Cham1 - Tturgidum-JKxC-5A Xbcd926-5A locus 41.7 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-5A Xbcd926-5A locus 43.5 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-5A Xbcd926-5A locus 35.4 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, DR Genes - Ta-Synthetic/Opata-DR-5A Xbcd926-5A locus 31.2 () Automated name-based View Maps
Wheat AB - T. turgidum, JK x Cham1, 2 - Tturgidum-JKxC2-5A Xbcd926-5A locus 22.1 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-5A Xbcd926-5A locus 69.7 () Automated name-based View Maps
Xpsr145-5A locus 0.73 Wheat AB - T. turgidum, Messapia x dicoccoides, SSR - Tturgidum-SSR-5A Xpsr145-5A locus 109.9 () Automated name-based View Maps
Wheat ABD - Wheat, Arina x Forno - Triticum-AxF-5A Xpsr145-5A locus 135 () Automated name-based View Maps
Wheat ABD - Wheat, Gale - Ta-Gale-5A Xpsr145-5A locus 78.9 () Automated name-based View Maps
Wheat AB - T. turgidum, Messapia x dicoccoides - Tturgidum-MxM-5A Xpsr145-5A locus 130.7 () Automated name-based View Maps
Wheat AB - T. turgidum, Messapia x dicoccoides, AFLP - Tturgidum-MxM-AFLP-5A Xpsr145-5A locus 189.4 () Automated name-based View Maps
Wheat ABD - Wheat, Forno x Oberkulmer - Triticum-FxO-5A Xpsr145-5A locus 193 () Automated name-based View Maps
Xcdo504-5A locus 0.73 Wheat AB - T. turgidum, Messapia x dicoccoides, AFLP - Tturgidum-MxM-AFLP-5A Xcdo504-5A locus 177 () Automated name-based View Maps
Wheat ABD - Wheat, Courtot x Chinese Spring, GPW - Ta-Courtot/CS-GPW-5A Xcdo504-5A locus 154.6 () Automated name-based View Maps
Wheat AB - T. turgidum, Messapia x dicoccoides, SSR - Tturgidum-SSR-5A Xcdo504-5A locus 97.4 () Automated name-based View Maps
Wheat ABD - 5A, DS 5AIran - 5A, DS 5AIran Xcdo504-5A locus 121.8 () Automated name-based View Maps
Wheat AB - T. turgidum, Messapia x dicoccoides - Tturgidum-MxM-5A Xcdo504-5A locus 118.3 () Automated name-based View Maps
Wheat ABD - 5A, DS 5AEurope - 5A, DS 5AEurope Xcdo504-5A locus 93 () Automated name-based View Maps
Xpsr326-5A locus -0.87 Wheat ABD - Wheat, Gale - Ta-Gale-5A Xpsr326-5A locus -7 () Automated name-based View Maps
Xpsr906-5A locus 0.28 Wheat ABD - Wheat, Gale - Ta-Gale-5A Xpsr906-5A locus 2.9 () Automated name-based View Maps
Xwg644-5A locus 0.8 No other positions
Xpsr120-5A locus 0.6 Wheat ABD - 5A, DS 5AEurope - 5A, DS 5AEurope Xpsr120-5A locus 71.9 () Automated name-based View Maps
Wheat ABD - 5A, DS 5AIran - 5A, DS 5AIran Xpsr120-5A locus 95.8 () Automated name-based View Maps
Wheat AB - T. turgidum, Messapia x dicoccoides, AFLP - Tturgidum-MxM-AFLP-5A Xpsr120-5A locus 147 () Automated name-based View Maps
Wheat AB - T. turgidum, Messapia x dicoccoides - Tturgidum-MxM-5A Xpsr120-5A locus 93.9 () Automated name-based View Maps
Wheat ABD - Wheat, Arina x Forno - Triticum-AxF-5A Xpsr120-5A locus 87.4 () Automated name-based View Maps
Wheat ABD - Wheat, Forno x Oberkulmer - Triticum-FxO-5A Xpsr120-5A locus 118 () Automated name-based View Maps
Wheat AB - T. turgidum, Messapia x dicoccoides, SSR - Tturgidum-SSR-5A Xpsr120-5A locus 61 () Automated name-based View Maps
Xwg232-5A locus 0.28 Wheat AB - T. turgidum, JK x Cham1, 2 - Tturgidum-JKxC2-5A Xwg232-5A locus 30.2 () Automated name-based View Maps
Wheat AB - T. turgidum, JK x Cham1 - Tturgidum-JKxC-5A Xwg232-5A locus 56.8 () Automated name-based View Maps
Xcdo344-5A locus -0.87 No other positions
Xcdo1338-5A locus -0.57 No other positions
Xrgc3-5A locus -0.57 No other positions
Xrgr2104-5A locus -0.57 No other positions
Xrgc711-5A locus 0.28 No other positions
Xcdo590-5A locus 0.28 No other positions
Xwg889-5A locus 0.28 No other positions
Xrz698-5A locus 0.28 No other positions
Xbcd1087-5A locus 0.28 No other positions
Xwg530-5A locus 0.28 No other positions
Xcdo400-5A locus 0.66 Wheat ABD - 5AL, CS q deletions, physical - 5AL, q deletions Xcdo400-5A locus 38 () Automated name-based View Maps
Xrz474-5A locus 0.68 No other positions
Xcdo520-5A locus 0.68 No other positions
Xrz630-5A locus 0.73 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.