*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat ABD-Wheat, Physical, R Genes
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Ta-Physical-RGenes-1D
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
breakpoint
breakpointinterval
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Wheat ABD - Wheat, Physical, R Genes [ View Map Set Info ]
Map Name: Ta-Physical-RGenes-1D
Map Start: -100
Map Stop: 100
Features by Type:
10 breakpoint
11 breakpointinterval
13 locus
34 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 34.       of 2 | Next
Wheat ABD - Wheat, Physical, R Genes - Ta-Physical-RGenes-1D
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Centromere-1D locus 0 Wheat ABD - Wheat, Grandin x BR34 - Ta-Grandin/BR34-1D Centromere-1D locus 41.3 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, DR Genes - Ta-Synthetic/Opata-DR-1D Centromere-1D locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR 2 - Ta-Synthetic/Opata-SSR2-1D Centromere-1D locus 68.9 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-1D Centromere-1D locus 50.5 - 54.7 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, gbx RFLP - Ta-Synthetic/Opata-gbx-1D Centromere-1D locus 46 () Automated name-based View Maps
Wheat ABD - Wheat, Arina x Forno - Triticum-AxF-1D Centromere-1D locus 42 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR-D - Ta-Synthetic/Opata-SSR_D-1D Centromere-1D locus 56.8 () Automated name-based View Maps
XBE405778 locus -85 Wheat ABD - Wheat, Physical, R Genes - Ta-Physical-RGenes-1A XBE405778 locus -93 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, R Genes - Ta-Physical-RGenes-1B XBE405778 locus -152 () Automated name-based View Maps
XBF475048 locus -85 Wheat ABD - Wheat, Physical, R Genes - Ta-Physical-RGenes-1B XBF475048 locus -152 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, R Genes - Ta-Physical-RGenes-1A XBF475048 locus -93 () Automated name-based View Maps
Xunl220 locus -58 Wheat ABD - Wheat, Physical, R Genes - Ta-Physical-RGenes-1A Xunl220 locus -65 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, R Genes - Ta-Physical-RGenes-1B Xunl220 locus -49 () Automated name-based View Maps
XBE473313 locus 71 Wheat ABD - Wheat, Physical, R Genes - Ta-Physical-RGenes-1B XBE473313 locus 86 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, R Genes - Ta-Physical-RGenes-1A XBE473313 locus 27 () Automated name-based View Maps
XBE605005 locus 71 Wheat ABD - Wheat, Physical, R Genes - Ta-Physical-RGenes-1B XBE605005 locus 89 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, R Genes - Ta-Physical-RGenes-1A XBE605005 locus 54 () Automated name-based View Maps
Xunl207 locus 71 Wheat ABD - Wheat, Physical, R Genes - Ta-Physical-RGenes-1B Xunl207 locus 65 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, R Genes - Ta-Physical-RGenes-1A Xunl207 locus 54 () Automated name-based View Maps
Xunl111 locus 71 Wheat ABD - Wheat, Physical, R Genes - Ta-Physical-RGenes-1A Xunl111 locus 54 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, R Genes - Ta-Physical-RGenes-1B Xunl111 locus 89 () Automated name-based View Maps
XBE492937a locus -85 Wheat ABD - Wheat, Physical, R Genes - Ta-Physical-RGenes-1B XBE492937a locus -152 () Automated name-based View Maps
XBE499561 locus -85 Wheat ABD - Wheat, Physical, R Genes - Ta-Physical-RGenes-1B XBE499561 locus -152 () Automated name-based View Maps
XBE444145 locus 71 Wheat ABD - Wheat, Physical, R Genes - Ta-Physical-RGenes-1B XBE444145 locus 47 () Automated name-based View Maps
XBE406625 locus 71 Wheat ABD - Wheat, Physical, R Genes - Ta-Physical-RGenes-1B XBE406625 locus 86 () Automated name-based View Maps
Xunl143a locus -85 No other positions
1DS-0.70-1.00 breakpointinterval -100 - -70 No other positions
1DS-0.57-0.59 breakpointinterval -59 - -57 No other positions
C-1DS-0.48 breakpointinterval -48 - 0 No other positions
C-1DL-0.18 breakpointinterval 0 - 18 No other positions
1DL-0.41-1.00 breakpointinterval 41 - 100 No other positions
1DS-0.66-0.70 breakpointinterval -70 - -66 No other positions
1DS-0.59-0.66 breakpointinterval -66 - -59 No other positions
1DS-0.48-0.57 breakpointinterval -57 - -48 No other positions
1DL-0.18-0.23 breakpointinterval 18 - 23 No other positions
1DL-0.23-0.25 breakpointinterval 23 - 25 No other positions
1DL-0.25-0.41 breakpointinterval 25 - 41 No other positions
1DS-5 breakpoint -70 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-1D 1DS-5 breakpoint -2.09 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.