*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat ABD-Wheat, Physical, SSR
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Chinese_Spring_Deletion_SSR_1A
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
breakpointinterval
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Cytogenetic [ View Map Type Info ]
Map Set Name: Wheat ABD - Wheat, Physical, SSR [ View Map Set Info ]
Map Name: Chinese_Spring_Deletion_SSR_1A
Map Start: -1
Map Stop: 1
Features by Type:
8 breakpointinterval
28 locus
36 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 26 to 36 of 36.       Previous | of 2
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_1A
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xbarc176-1A locus -0.24 No other positions
Xbarc1048-1A locus -0.66 No other positions
Xbarc1095-1A locus -0.66 No other positions
1AS3-0.86-1.00 breakpointinterval -1 - -0.86 Wheat ABD - Wheat deletion-line bins - CS-deletions-1A 1AS3-0.86-1.00 breakpointinterval -1 - -0.86 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_1A 1AS3-0.86-1.00 breakpointinterval -1 - -0.86 () Automated name-based View Maps
C-1AS1-0.47 breakpointinterval -0.47 - 0 Wheat ABD - Wheat deletion-line bins - CS-deletions-1A C-1AS1-0.47 breakpointinterval -0.47 - 0 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_1A C-1AS1-0.47 breakpointinterval -0.47 - 0 () Automated name-based View Maps
1AL3-0.61-1.00 breakpointinterval 0.61 - 1 Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_1A 1AL3-0.61-1.00 breakpointinterval 0.61 - 1 () Automated name-based View Maps
Wheat ABD - Wheat deletion-line bins - CS-deletions-1A 1AL3-0.61-1.00 breakpointinterval 0.61 - 1 () Automated name-based View Maps
1AS1-0.47-0.86 breakpointinterval -0.86 - -0.47 Wheat ABD - Wheat deletion-line bins - CS-deletions-1A 1AS1-0.47-0.86 breakpointinterval -0.86 - -0.47 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_1A 1AS1-0.47-0.86 breakpointinterval -0.86 - -0.47 () Automated name-based View Maps
C-1AL1-0.17 breakpointinterval 0 - 0.17 Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_1A C-1AL1-0.17 breakpointinterval 0 - 0.17 () Automated name-based View Maps
Wheat ABD - Wheat deletion-line bins - CS-deletions-1A C-1AL1-0.17 breakpointinterval 0 - 0.17 () Automated name-based View Maps
1AL1-0.17-0.61 breakpointinterval 0.17 - 0.61 Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_1A 1AL1-0.17-0.61 breakpointinterval 0.17 - 0.61 () Automated name-based View Maps
Wheat ABD - Wheat deletion-line bins - CS-deletions-1A 1AL1-0.17-0.61 breakpointinterval 0.17 - 0.61 () Automated name-based View Maps
C1A breakpointinterval 0 Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_1A C1A breakpointinterval 0 () Automated name-based View Maps
C-1AL-0.00-1.00* breakpointinterval 0 - 1 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.