*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat ABD-Wheat, Physical, SSR
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Chinese_Spring_Deletion_SSR_2A
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
breakpointinterval
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Cytogenetic [ View Map Type Info ]
Map Set Name: Wheat ABD - Wheat, Physical, SSR [ View Map Set Info ]
Map Name: Chinese_Spring_Deletion_SSR_2A
Map Start: -1
Map Stop: 1
Features by Type:
5 breakpointinterval
34 locus
39 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 26 to 39 of 39.       Previous | of 2
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_2A
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xgwm95-2A locus -0.39 Wheat AB - T. turgidum, Omrabi5 x dicoccoides, QTL - Tt-Oxd-QTL-2A Xgwm95-2A locus 229.9 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-2A Xgwm95-2A locus 77.7 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-2A Xgwm95-2A locus 110.4 () Automated name-based View Maps
Wheat ABD - Wheat, USG3209 x Jaypee - USG3209/Jaypee-2A Xgwm95-2A locus 127.7 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-2A Xgwm95-2A locus 52.5 () Automated name-based View Maps
Wheat ABD - Wheat, P91193D1 x P92201D5 - P91193D1/P92201D5-2A Xgwm95-2A locus 89.9 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-2A Xgwm95-2A locus 95.7 () Automated name-based View Maps
Xgwm249-2A locus 0.42 Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-2A Xgwm249-2A locus 111.9 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-2A Xgwm249-2A locus 95.8 () Automated name-based View Maps
Wheat AB - Durum wheat, Kofa x UC1113 - Kofa/UC1113-2A Xgwm249-2A locus 71.3 () Automated name-based View Maps
Wheat ABD - Wheat_Yr79_2018 - Wheat_Yr79_2018-2AS Xgwm249-2A locus 16.2 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-2A Xgwm249-2A locus 52.5 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-2A Xgwm249-2A locus 79.3 () Automated name-based View Maps
Xgwm445-2A locus 0.42 Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-2A Xgwm445-2A locus 121.5 () Automated name-based View Maps
Wheat ABD - Wheat, 2006, purple grain - Wheat_Novo67xPurple_2006-2A Xgwm445-2A locus 22.4 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-2A Xgwm445-2A locus 113.4 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-2A Xgwm445-2A locus 68.2 () Automated name-based View Maps
Wheat ABD - Wheat, 2006, purple grain - Wheat_Novo67xPurpleFeed_2006-2A Xgwm445-2A locus 31.6 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-2A Xgwm445-2A locus 86.7 () Automated name-based View Maps
Wheat AB - T. turgidum, Messapia x dicoccoides, SSR - Tturgidum-SSR-2A Xgwm445-2A locus 27.8 () Automated name-based View Maps
Xgwm265-2A locus 0.92 Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-2A Xgwm265-2A locus 154.8 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-2A Xgwm265-2A locus 112.3 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-2A Xgwm265-2A locus 133.1 () Automated name-based View Maps
Xbarc220-2A locus 0.42 Wheat ABD - Wheat-2014-Consensus-Ug99-Update - Wheat-2014-Consensus-Ug99-Update barc220 locus 27.83 () Automated name-based View Maps
Wheat AB - Durum wheat, Kofa x UC1113 - Kofa/UC1113-2A Xbarc220-2A locus 79 () Automated name-based View Maps
Wheat ABD - Wheat_Consensus_2014_Ug99_Rust - Wheat_Consensus_2014_Ug99_Rust_2 barc220 locus 27.83 () Automated name-based View Maps
Xgwm311-2A locus 0.92 Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-2A Xgwm311-2A locus 133 () Automated name-based View Maps
Wheat AB - T. turgidum, Omrabi5 x dicoccoides, QTL - Tt-Oxd-QTL-2A Xgwm311-2A locus 289.4 () Automated name-based View Maps
Wheat A - T. boeoticum x monococcum - T.b.xT.m.-2A Xgwm311-2A locus 247.6 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-2A Xgwm311-2A locus 112.9 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-2A Xgwm311-2A locus 142.5 () Automated name-based View Maps
Wheat ABD - Wheat, Arina x Forno - Triticum-AxF-2A Xgwm311-2A locus 200.7 () Automated name-based View Maps
Xbarc124-2A locus -0.89 Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-2A Xbarc124-2A locus 14.5 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-2A Xbarc124-2A locus 35.5 () Automated name-based View Maps
Wheat A - T. boeoticum x monococcum - T.b.xT.m.-2A Xbarc124-2A locus 25.1 () Automated name-based View Maps
Wheat ABD - Wheat_Yr69_2016 - Wheat_Yr69_2016-2A Xbarc124-2A locus 25.2 (cM) Automated name-based View Maps
Xbarc138-2A locus -0.89 No other positions
Xbarc208-2A locus -0.39 No other positions
C-2AS5-0.78 breakpointinterval -0.78 - 0 Wheat ABD - Wheat deletion-line bins - CS-deletions-2A C-2AS5-0.78 breakpointinterval -0.78 - 0 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_2A C-2AS5-0.78 breakpointinterval -0.78 - 0 () Automated name-based View Maps
C-2AL1-0.85 breakpointinterval 0 - 0.85 Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_2A C-2AL1-0.85 breakpointinterval 0 - 0.85 () Automated name-based View Maps
Wheat ABD - Wheat deletion-line bins - CS-deletions-2A C-2AL1-0.85 breakpointinterval 0 - 0.85 () Automated name-based View Maps
2AL1-0.85-1.00 breakpointinterval 0.85 - 1 Wheat ABD - Wheat deletion-line bins - CS-deletions-2A 2AL1-0.85-1.00 breakpointinterval 0.85 - 1 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_2A 2AL1-0.85-1.00 breakpointinterval 0.85 - 1 () Automated name-based View Maps
2AS5-0.78-1.00 breakpointinterval -1 - -0.78 Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_2A 2AS5-0.78-1.00 breakpointinterval -1 - -0.78 () Automated name-based View Maps
Wheat ABD - Wheat deletion-line bins - CS-deletions-2A 2AS5-0.78-1.00 breakpointinterval -1 - -0.78 () Automated name-based View Maps
C2A breakpointinterval 0 Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_2A C2A breakpointinterval 0 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.