*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat ABD-Wheat, Physical, SSR
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Chinese_Spring_Deletion_SSR_4A
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
breakpointinterval
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Cytogenetic [ View Map Type Info ]
Map Set Name: Wheat ABD - Wheat, Physical, SSR [ View Map Set Info ]
Map Name: Chinese_Spring_Deletion_SSR_4A
Map Start: -1
Map Stop: 1
Features by Type:
10 breakpointinterval
22 locus
32 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 32.       of 2 | Next
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_4A
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xbarc78-4A locus 0.9 Wheat AB - Durum wheat, Kofa x UC1113 - Kofa/UC1113-4A Xbarc78-4A locus 121.4 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-4A Xbarc78-4A locus 70.9 () Automated name-based View Maps
Wheat ABD - Wheat, Louise x Penawawa - Louise/Penawawa-4A Xbarc78-4A locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Chinese Spring x SQ1 - CS/SQ1-4A Xbarc78-4A locus 44.1 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-4A Xbarc78-4A locus 83.2 () Automated name-based View Maps
Xgwm160-4A locus 0.9 Wheat ABD - Wheat, Arina x Forno - Triticum-AxF-4A Xgwm160-4A locus 105.7 () Automated name-based View Maps
Wheat ABD - Wheat, Chinese Spring x SQ1 - CS/SQ1-4A Xgwm160-4A locus 45.2 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-4A Xgwm160-4A locus 77.1 () Automated name-based View Maps
Wheat AB - T. turgidum, Messapia x dicoccoides, SSR - Tturgidum-SSR-4A Xgwm160-4A locus 123.8 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-4A Xgwm160-4A locus 78.9 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-4A Xgwm160-4A locus 115.5 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-4A Xgwm160-4A locus 102.05 () Automated name-based View Maps
Xgwm397-4A locus 0.62 Wheat AB - T. turgidum, Messapia x dicoccoides, SSR - Tturgidum-SSR-4A Xgwm397-4A locus 21.1 () Automated name-based View Maps
Wheat ABD - Wheat, Arina x Forno - Triticum-AxF-4A Xgwm397-4A locus 10 () Automated name-based View Maps
Wheat ABD - Wheat, Conan x Reeder - Conan/Reeder-4A Xgwm397-4A locus 31.6 () Automated name-based View Maps
Wheat ABD - Wheat, P91193D1 x P92201D5 - P91193D1/P92201D5-4A Xgwm397-4A locus 21.9 () Automated name-based View Maps
Wheat ABD - Wheat, Chinese Spring x SQ1 - CS/SQ1-4A Xgwm397-4A locus 134.8 () Automated name-based View Maps
Wheat A - T. boeoticum x monococcum - T.b.xT.m.-4A Xgwm397-4A locus 3.3 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-4A Xgwm397-4A locus 45.5 () Automated name-based View Maps
Wheat ABD - Wheat, Forno x Oberkulmer - Triticum-FxO-4A Xgwm397-4A locus 7 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-4A Xgwm397-4A locus 18.4 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-4A Xgwm397-4A locus 39.6 () Automated name-based View Maps
Wheat ABD - Wheat, Courtot x Chinese Spring, GPW - Ta-Courtot/CS-GPW-4A Xgwm397-4A locus -48.8 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-4A Xgwm397-4A locus 41.3 () Automated name-based View Maps
Xbarc1052-4A locus -0.1 Wheat ABD - Wheat-2014-Consensus-Ug99-Update - Wheat-2014-Consensus-Ug99-Update barc1052 locus 25.77 () Automated name-based View Maps
Wheat ABD - Wheat_Consensus_2014_Ug99_Rust - Wheat_Consensus_2014_Ug99_Rust_4 barc1052 locus 25.77 () Automated name-based View Maps
Wheat ABD - Wheat, Conan x Reeder - Conan/Reeder-4A Xbarc1052-4A locus 18.45 () Automated name-based View Maps
Xbarc1047-4A locus 0.73 Wheat ABD - Wheat, Conan x Reeder - Conan/Reeder-4A Xbarc1047-4A locus 73.02 () Automated name-based View Maps
Wheat ABD - Wheat, P91193D1 x P92201D5 - P91193D1/P92201D5-4A Xbarc1047-4A locus 79.5 () Automated name-based View Maps
Xgwm610-4A locus -0.1 Wheat ABD - Wheat, Courtot x Chinese Spring, GPW - Ta-Courtot/CS-GPW-4A Xgwm610-4A locus -42.7 () Automated name-based View Maps
Wheat AB - T. turgidum, Messapia x dicoccoides, SSR - Tturgidum-SSR-4A Xgwm610-4A locus 12.9 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-4A Xgwm610-4A locus 12.1 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-4A Xgwm610-4A locus 30.4 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-4A Xgwm610-4A locus 27.85 () Automated name-based View Maps
Wheat AB - T. turgidum, Omrabi5 x dicoccoides, QTL - Tt-Oxd-QTL-4A Xgwm610-4A locus 61 () Automated name-based View Maps
Xcfd2-4A locus -0.88 Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-4A Xcfd2-4A locus 81 () Automated name-based View Maps
Wheat ABD - Wheat, Courtot x Chinese Spring, GPW - Ta-Courtot/CS-GPW-4A Xcfd2-4A locus 4.5 () Automated name-based View Maps
Xgwm165-4A locus -0.88 Wheat AB - Durum wheat, Kofa x UC1113 - Kofa/UC1113-4A Xgwm165-4A locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Courtot x Chinese Spring, GPW - Ta-Courtot/CS-GPW-4A Xgwm165-4A locus 34.1 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-4A Xgwm165-4A locus 12.2 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-4A Xgwm165-4A locus 17.9 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-4A Xgwm165-4A locus 19.4 () Automated name-based View Maps
Wheat AB - T. turgidum, Omrabi5 x dicoccoides, QTL - Tt-Oxd-QTL-4A Xgwm165-4A locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-4A Xgwm165-4A locus 2.4 () Automated name-based View Maps
Xcfd71-4A locus -0.42 Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-4A Xcfd71-4A locus 8.4 () Automated name-based View Maps
Wheat ABD - Wheat, Courtot x Chinese Spring, GPW - Ta-Courtot/CS-GPW-4A Xcfd71-4A locus 35.2 () Automated name-based View Maps
Wheat A - T. boeoticum x monococcum - T.b.xT.m.-4A Xcfd71-4A locus 59.5 () Automated name-based View Maps
Xcfa2256-4A locus -0.88 Wheat ABD - Wheat, Courtot x Chinese Spring, GPW - Ta-Courtot/CS-GPW-4A Xcfa2256-4A locus 38.5 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-4A Xcfa2256-4A locus 10 () Automated name-based View Maps
Wheat ABD - Wheat, Louise x Penawawa - Louise/Penawawa-4A Xcfa2256-4A locus 97.9 () Automated name-based View Maps
Xcfd16-4A locus -0.42 Wheat ABD - Wheat, Courtot x Chinese Spring, GPW - Ta-Courtot/CS-GPW-4A Xcfd16-4A locus 38.5 () Automated name-based View Maps
Xgwm637-4A locus 0.62 Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-4A Xgwm637-4A locus 36.5 () Automated name-based View Maps
Wheat AB - T. turgidum, JK x Cham1, 2 - Tturgidum-JKxC2-4A Xgwm637-4A locus 381.9 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-4A Xgwm637-4A locus 45 () Automated name-based View Maps
Wheat AB - T. turgidum, Messapia x dicoccoides, SSR - Tturgidum-SSR-4A Xgwm637-4A locus 48 () Automated name-based View Maps
Wheat AB - T. turgidum, JK x Cham1 - Tturgidum-JKxC-4A Xgwm637-4A locus 225.2 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-4A Xgwm637-4A locus 63.3 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-4A Xgwm637-4A locus 57.2 () Automated name-based View Maps
Xcfd88-4A locus 0.62 Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-4A Xcfd88-4A locus 60.3 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-4A Xcfd88-4A locus 96.8 () Automated name-based View Maps
Xgpw1142-4A locus 0.9 Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-4A Xgpw1142-4A locus 165.8 () Automated name-based View Maps
Xcfd31-4A locus 0.9 Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-4A Xcfd31-4A locus 185.3 () Automated name-based View Maps
Xbarc206-4A locus -0.88 Wheat ABD - Wheat, Grandin x BR34 - Ta-Grandin/BR34-4A Xbarc206-4A locus 11.8 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-4A Xbarc206-4A locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-4A Xbarc206-4A locus 3.6 () Automated name-based View Maps
Xbarc106-4A locus 0.22 Wheat A - T. boeoticum x monococcum - T.b.xT.m.-4A Xbarc106-4A locus 58.9 () Automated name-based View Maps
Wheat ABD - Wheat, Grandin x BR34 - Ta-Grandin/BR34-4A Xbarc106-4A locus 26.7 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-4A Xbarc106-4A locus 22.7 () Automated name-based View Maps
Xbarc170-4A locus 0.62 Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-4A Xbarc170-4A locus 47.6 () Automated name-based View Maps
Wheat AB - Durum wheat, Kofa x UC1113 - Kofa/UC1113-4A Xbarc170-4A locus 46.2 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-4A Xbarc170-4A locus 26.6 () Automated name-based View Maps
Xbarc52-4A locus 0.9 Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-4A Xbarc52-4A locus 96.9 () Automated name-based View Maps
Wheat AB - Durum wheat, Kofa x UC1113 - Kofa/UC1113-4A Xbarc52-4A locus 128.6 () Automated name-based View Maps
Xgwm601-4A locus 0.22 Wheat AB - T. turgidum, Omrabi5 x dicoccoides, QTL - Tt-Oxd-QTL-4A Xgwm601-4A locus 32.4 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-4A Xgwm601-4A locus 8.9 () Automated name-based View Maps
Wheat AB - T. turgidum, Messapia x dicoccoides, SSR - Tturgidum-SSR-4A Xgwm601-4A locus 3.2 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-4A Xgwm601-4A locus 23 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-4A Xgwm601-4A locus 12 () Automated name-based View Maps
Xbarc153-4A locus 0.9 Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-4A Xbarc153-4A locus 116.8 () Automated name-based View Maps
XksuM20-4A locus 0.73 No other positions
4AL13-0.59-0.66 breakpointinterval 0.59 - 0.66 Wheat ABD - Wheat deletion-line bins - CS-deletions-4A 4AL13-0.59-0.66 breakpointinterval 0.59 - 0.66 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_4A 4AL13-0.59-0.66 breakpointinterval 0.59 - 0.66 () Automated name-based View Maps
4AL4-0.80-1.00 breakpointinterval 0.8 - 1 Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_4A 4AL4-0.80-1.00 breakpointinterval 0.8 - 1 () Automated name-based View Maps
Wheat ABD - Wheat deletion-line bins - CS-deletions-4A 4AL4-0.80-1.00 breakpointinterval 0.8 - 1 () Automated name-based View Maps
4AS3-0.76-1.00 breakpointinterval -1 - -0.76 Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_4A 4AS3-0.76-1.00 breakpointinterval -1 - -0.76 () Automated name-based View Maps
Wheat ABD - Wheat deletion-line bins - CS-deletions-4A 4AS3-0.76-1.00 breakpointinterval -1 - -0.76 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.