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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat ABD-Wheat, Physical, SSR
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Chinese_Spring_Deletion_SSR_4A
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Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
breakpointinterval
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Cytogenetic [ View Map Type Info ]
Map Set Name: Wheat ABD - Wheat, Physical, SSR [ View Map Set Info ]
Map Name: Chinese_Spring_Deletion_SSR_4A
Map Start: -1
Map Stop: 1
Features by Type:
10 breakpointinterval
22 locus
32 Total

Map Features

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Items 26 to 32 of 32.       Previous | of 2
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_4A
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
4AS4-0.63-0.76 breakpointinterval -0.76 - -0.63 Wheat ABD - Wheat deletion-line bins - CS-deletions-4A 4AS4-0.63-0.76 breakpointinterval -0.76 - -0.63 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_4A 4AS4-0.63-0.76 breakpointinterval -0.76 - -0.63 () Automated name-based View Maps
4AS1-0.20-0.63 breakpointinterval -0.63 - -0.2 Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_4A 4AS1-0.20-0.63 breakpointinterval -0.63 - -0.2 () Automated name-based View Maps
Wheat ABD - Wheat deletion-line bins - CS-deletions-4A 4AS1-0.20-0.63 breakpointinterval -0.63 - -0.2 () Automated name-based View Maps
C-4AS1-0.20 breakpointinterval -0.2 - 0 Wheat ABD - Wheat deletion-line bins - CS-deletions-4A C-4AS1-0.20 breakpointinterval -0.2 - 0 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_4A C-4AS1-0.20 breakpointinterval -0.2 - 0 () Automated name-based View Maps
C-4AL12-0.43 breakpointinterval 0 - 0.43 Wheat ABD - Wheat deletion-line bins - CS-deletions-4A C-4AL12-0.43 breakpointinterval 0 - 0.43 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_4A C-4AL12-0.43 breakpointinterval 0 - 0.43 () Automated name-based View Maps
4AL12-0.43-0.59 breakpointinterval 0.43 - 0.59 Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_4A 4AL12-0.43-0.59 breakpointinterval 0.43 - 0.59 () Automated name-based View Maps
Wheat ABD - Wheat deletion-line bins - CS-deletions-4A 4AL12-0.43-0.59 breakpointinterval 0.43 - 0.59 () Automated name-based View Maps
4AL5-0.66-0.80 breakpointinterval 0.66 - 0.8 Wheat ABD - Wheat deletion-line bins - CS-deletions-4A 4AL5-0.66-0.80 breakpointinterval 0.66 - 0.8 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_4A 4AL5-0.66-0.80 breakpointinterval 0.66 - 0.8 () Automated name-based View Maps
C4A breakpointinterval 0 Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_4A C4A breakpointinterval 0 () Automated name-based View Maps

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