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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat ABD-Wheat, Physical, SSR
(Reference Set)
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Correspondences
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Maps Chinese_Spring_Deletion_SSR_4B
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
breakpointinterval
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
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Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
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 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
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Correspondences
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Sanity Check:		 No Yes
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Map Details

Map Type: Cytogenetic [ View Map Type Info ]
Map Set Name: Wheat ABD - Wheat, Physical, SSR [ View Map Set Info ]
Map Name: Chinese_Spring_Deletion_SSR_4B
Map Start: -1
Map Stop: 1
Features by Type:
8 breakpointinterval
29 locus
37 Total

Map Features

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Items 26 to 37 of 37.       Previous | of 2
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_4B
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xbarc199-4B locus 0.36 No other positions
Xbarc1001-4B locus -0.18 No other positions
Xbarc1045-4B locus -0.18 Wheat ABD - Wheat_Consensus_2014_Ug99_Rust - Wheat_Consensus_2014_Ug99_Rust_4 barc1045 locus 25.66 () Automated name-based View Maps
Wheat ABD - Wheat-2014-Consensus-Ug99-Update - Wheat-2014-Consensus-Ug99-Update barc1045 locus 25.66 () Automated name-based View Maps
XbarcM174-4B locus 0.36 No other positions
4BS4-0.37-0.57 breakpointinterval -0.57 - -0.37 Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_4B 4BS4-0.37-0.57 breakpointinterval -0.57 - -0.37 () Automated name-based View Maps
Wheat ABD - Wheat deletion-line bins - CS-deletions-4B 4BS4-0.37-0.57 breakpointinterval -0.57 - -0.37 () Automated name-based View Maps
C-4BS4-0.37 breakpointinterval -0.37 - 0 Wheat ABD - Wheat deletion-line bins - CS-deletions-4B C-4BS4-0.37 breakpointinterval -0.37 - 0 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_4B C-4BS4-0.37 breakpointinterval -0.37 - 0 () Automated name-based View Maps
4BS1-0.81-1.00 breakpointinterval -1 - -0.81 Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_4B 4BS1-0.81-1.00 breakpointinterval -1 - -0.81 () Automated name-based View Maps
Wheat ABD - Wheat deletion-line bins - CS-deletions-4B 4BS1-0.81-1.00 breakpointinterval -1 - -0.81 () Automated name-based View Maps
4BS8-0.57-0.81 breakpointinterval -0.81 - -0.57 Wheat ABD - Wheat deletion-line bins - CS-deletions-4B 4BS8-0.57-0.81 breakpointinterval -0.81 - -0.57 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_4B 4BS8-0.57-0.81 breakpointinterval -0.81 - -0.57 () Automated name-based View Maps
4BL5-0.71-0.86 breakpointinterval 0.71 - 0.86 Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_4B 4BL5-0.71-0.86 breakpointinterval 0.71 - 0.86 () Automated name-based View Maps
C4B breakpointinterval 0 Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_4B C4B breakpointinterval 0 () Automated name-based View Maps
4BL1-0.86-1.00 breakpointinterval 0.86 - 1 No other positions
C-4BL5-0.71 breakpointinterval 0 - 0.71 No other positions

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