*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat ABD-Wheat, Synthetic x Opata, BARC
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Ta-Synthetic/Opata-BARC-1D
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
baccontig
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Wheat ABD - Wheat, Synthetic x Opata, BARC [ View Map Set Info ]
Map Name: Ta-Synthetic/Opata-BARC-1D
Map Start: 0
Map Stop: 156.9
Features by Type:
10 baccontig
44 locus
54 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 26 to 50 of 54.       Previous | of 3 | Next
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-1D
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xpsr11(Glu-3)-1D locus 0 Wheat ABD - Wheat, Gale - Ta-Gale-1D Xpsr11(Glu-3)-1D locus -42.8 () Automated name-based View Maps
Xbarc152-1D locus 25.1 Wheat ABD - Wheat, Grandin x BR34 - Ta-Grandin/BR34-1D Xbarc152-1D locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_1D Xbarc152-1D locus -0.24 () Automated name-based View Maps
Xbarc119-1D locus 156.7 Wheat ABD - Wheat, Grandin x BR34 - Ta-Grandin/BR34-1D Xbarc119-1D locus 128.1 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-1D Xbarc119-1D locus 44.2 () Automated name-based View Maps
Xbarc66-1D locus 99.4 Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_1D Xbarc66-1D locus 0.3 () Automated name-based View Maps
Wheat ABD - Wheat, Grandin x BR34 - Ta-Grandin/BR34-1D Xbarc66-1D locus 149.2 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-1D Xbarc66-1D locus 92.2 () Automated name-based View Maps
Xbarc169-1D locus 61.5 Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-1D Xbarc169-1D locus 58.4 () Automated name-based View Maps
Wheat ABD - Wheat, Louise x Penawawa - Louise/Penawawa-1D Xbarc169-1D locus 35.1 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_1D Xbarc169-1D locus 0.09 () Automated name-based View Maps
Glu-D1 locus 73.8 Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 1D Glu-D1 locus 50.5 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR 2 - Ta-Synthetic/Opata-SSR2-1D Glu-D1 locus 104.7 () Automated name-based View Maps
Wheat ABD - Wheat genes - Triticum-Genes-1D Glu-D1 locus 18.7 () Automated name-based View Maps
Wheat D - T.tauschii - Tt-Gill-1D Glu-D1 locus 160.6 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-1D Glu-D1 locus 74 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1D Glu-D1 locus 80 () Automated name-based View Maps
Wheat ABD - Wheat, Yr Update, 2021 - Wheat_Yr_2021-1D Glu-D1 locus 100.43 (cM) Automated name-based View Maps
Xcmwg693-1D locus 131.9 Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-1D Xcmwg693-1D locus 120.5 () Automated name-based View Maps
Xcmwg701-1D locus 105 Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-1D Xcmwg701-1D locus 108.7 () Automated name-based View Maps
Xcmwg733-1D locus 88.4 Wheat ABD - Wheat, Synthetic x Opata, gbx RFLP - Ta-Synthetic/Opata-gbx-1D Xcmwg733-1D locus 83.4 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-1D Xcmwg733-1D locus 89.8 () Automated name-based View Maps
XksuI27-1D.1 locus 148.6 Wheat ABD - Wheat, Synthetic x Opata, gbx RFLP - Ta-Synthetic/Opata-gbx-1D XksuI27-1D.1 locus 148.4 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-1D XksuI27-1D.1 locus 144.4 () Automated name-based View Maps
Xwhs179-1D.1 locus 9.2 Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-1D Xwhs179-1D.1 locus 12.3 () Automated name-based View Maps
Wheat D - 1DS, Ae. tauschii - 1DS, Ae. tauschii Xwhs179-1D.1 locus 12.8 () Automated name-based View Maps
Wheat D - 1DS, A.tauschii, AUS x CPI - 1DS-A.tauschii-AUSxCPI Xwhs179-1D.1 locus 5.2 () Automated name-based View Maps
Xwhs179-1D.2 locus 15.1 Wheat D - 1DS, A.tauschii, AUS x CPI - 1DS-A.tauschii-AUSxCPI Xwhs179-1D.2 locus 8.6 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-1D Xwhs179-1D.2 locus 22.5 () Automated name-based View Maps
Wheat D - 1DS, Ae. tauschii - 1DS, Ae. tauschii Xwhs179-1D.2 locus 18.8 () Automated name-based View Maps
Xbarc62-1D locus 156.9 Wheat ABD - Wheat, USG3209 x Jaypee - USG3209/Jaypee-1D Xbarc62-1D locus 68.2 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-1D Xbarc62-1D locus 117 () Automated name-based View Maps
Xcnl7-1D locus 20.6 Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-1D Xcnl7-1D locus 27.3 () Automated name-based View Maps
Xbarc99-1D locus 53.3 Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-1D Xbarc99-1D locus 50.5 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_1D Xbarc99-1D locus 0.09 () Automated name-based View Maps
Xbarc229-1D.1 locus 52.1 No other positions
Xbarc229-1D.2 locus 44.2 No other positions
Xbarc271-1D locus 110.5 No other positions
Xbarc346-1D locus 128.5 No other positions
D1.1_ctg1298 baccontig 137.3 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1D D1.1_ctg1298 baccontig 102 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-1D D1.1_ctg1298 baccontig 4.46 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 1D D1.1_ctg1298 baccontig 86.5 () Automated name-based View Maps
Wheat ABD - Wheat, Yr Update, 2021 - Wheat_Yr_2021-1D D1.1_ctg1298 baccontig 172.07 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5D D1.1_ctg1298 baccontig 4.23 () Automated name-based, Automated name-based View Maps
D1.1_ctg1648 baccontig 88 Wheat ABD - Wheat, Yr Update, 2021 - Wheat_Yr_2021-1D D1.1_ctg1648 baccontig 122.6 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 1D D1.1_ctg1648 baccontig 61.7 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-4D D1.1_ctg1648 baccontig 10 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1D D1.1_ctg1648 baccontig 86 () Automated name-based View Maps
D1.1_ctg2680 baccontig 88 Wheat ABD - Wheat, Yr Update, 2021 - Wheat_Yr_2021-1D D1.1_ctg2680 baccontig 122.6 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-4D D1.1_ctg2680 baccontig 10 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 1D D1.1_ctg2680 baccontig 61.7 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1D D1.1_ctg2680 baccontig 86 () Automated name-based View Maps
D1.1_ctg4584 baccontig 8.2 Wheat ABD - Wheat, Gale - Ta-Gale-4D D1.1_ctg4584 baccontig -11.7 () Automated name-based View Maps
Wheat ABD - Wheat, Yr Update, 2021 - Wheat_Yr_2021-1D D1.1_ctg4584 baccontig 1.84 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-6D D1.1_ctg4584 baccontig 0.26 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1D D1.1_ctg4584 baccontig 8 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 1D D1.1_ctg4584 baccontig 0.9 () Automated name-based View Maps
D1.1_ctg4643 baccontig 78.9 Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 1D D1.1_ctg4643 baccontig 55.2 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, DR Genes - Ta-Synthetic/Opata-DR-1D D1.1_ctg4643 baccontig 22.7 () Automated name-based View Maps
Wheat ABD - Wheat, Yr Update, 2021 - Wheat_Yr_2021-1D D1.1_ctg4643 baccontig 109.71 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1D D1.1_ctg4643 baccontig 82 () Automated name-based View Maps
D1.1_ctg4680 baccontig 8.2 Wheat ABD - Wheat, Yr Update, 2021 - Wheat_Yr_2021-1D D1.1_ctg4680 baccontig 1.84 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 1D D1.1_ctg4680 baccontig 0.9 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1D D1.1_ctg4680 baccontig 8 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.