*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat ABD-Wheat, Synthetic x Opata, BARC
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Ta-Synthetic/Opata-BARC-4D
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
baccontig
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Wheat ABD - Wheat, Synthetic x Opata, BARC [ View Map Set Info ]
Map Name: Ta-Synthetic/Opata-BARC-4D
Map Start: 0
Map Stop: 105.4
Features by Type:
16 baccontig
31 locus
47 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 47.       of 2 | Next
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-4D
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xgwm609-4D locus 102.3 Wheat ABD - Wheat, Chinese Spring x SQ1 - CS/SQ1-4D Xgwm609-4D locus 150.4 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-4D Xgwm609-4D locus 91.3 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-4D Xgwm609-4D locus 124.2 () Automated name-based View Maps
Xmwg634-4D locus 0 Wheat ABD - Wheat, Synthetic x Opata, gbx RFLP - Ta-Synthetic/Opata-gbx-4D Xmwg634-4D locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, DR Genes - Ta-Synthetic/Opata-DR-4D Xmwg634-4D locus -52.2 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-4D Xmwg634-4D locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-4D Xmwg634-4D locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR-D - Ta-Synthetic/Opata-SSR_D-4D Xmwg634-4D locus 0 () Automated name-based View Maps
Xcdo669-4D locus 17.2 Wheat ABD - Wheat, Synthetic x Opata, DR Genes - Ta-Synthetic/Opata-DR-4D Xcdo669-4D locus -25.4 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-4D Xcdo669-4D locus 26.8 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, gbx RFLP - Ta-Synthetic/Opata-gbx-4D Xcdo669-4D locus 26.8 () Automated name-based View Maps
Xbcd265-4D locus 30.9 Wheat ABD - Wheat, Synthetic x Opata, SSR-D - Ta-Synthetic/Opata-SSR_D-4D Xbcd265-4D locus 33.2 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-4D Xbcd265-4D locus 42.2 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR 2 - Ta-Synthetic/Opata-SSR2-4D Xbcd265-4D locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-4D Xbcd265-4D locus 32 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, DR Genes - Ta-Synthetic/Opata-DR-4D Xbcd265-4D locus -10 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, gbx RFLP - Ta-Synthetic/Opata-gbx-4D Xbcd265-4D locus 42.2 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-4D Xbcd265-4D locus 0 () Automated name-based View Maps
Xbcd327-4D locus 39.9 Wheat ABD - Wheat, Synthetic x Opata, DR Genes - Ta-Synthetic/Opata-DR-4D Xbcd327-4D locus -1.3 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-4D Xbcd327-4D locus 10.3 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR-D - Ta-Synthetic/Opata-SSR_D-4D Xbcd327-4D locus 42.6 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-4D Xbcd327-4D locus 50.9 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-4D Xbcd327-4D locus 40.6 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, gbx RFLP - Ta-Synthetic/Opata-gbx-4D Xbcd327-4D locus 51.6 () Automated name-based View Maps
XksuF8-4D locus 43.8 Wheat ABD - Wheat, Synthetic x Opata, SSR 2 - Ta-Synthetic/Opata-SSR2-4D XksuF8-4D locus 15.7 () Automated name-based View Maps
Wheat ABD - Wheat, Gale - Ta-Gale-4D XksuF8-4D locus 5.7 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR-D - Ta-Synthetic/Opata-SSR_D-4D XksuF8-4D locus 48 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-4D XksuF8-4D locus 54.7 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-4D XksuF8-4D locus 44.4 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-4D XksuF8-4D locus 14 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, DR Genes - Ta-Synthetic/Opata-DR-4D XksuF8-4D locus 2.5 () Automated name-based View Maps
Xbcd15-4D locus 55.4 Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-4D Xbcd15-4D locus 70.5 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR-D - Ta-Synthetic/Opata-SSR_D-4D Xbcd15-4D locus 58.6 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, gbx RFLP - Ta-Synthetic/Opata-gbx-4D Xbcd15-4D locus 71.5 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-4D Xbcd15-4D locus 25.9 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, DR Genes - Ta-Synthetic/Opata-DR-4D Xbcd15-4D locus 12.7 () Automated name-based View Maps
Xfbb178-4D locus 58.9 Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-4D Xfbb178-4D locus 76.1 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR-D - Ta-Synthetic/Opata-SSR_D-4D Xfbb178-4D locus 63.9 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-4D Xfbb178-4D locus 31.4 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, DR Genes - Ta-Synthetic/Opata-DR-4D Xfbb178-4D locus 18 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR 2 - Ta-Synthetic/Opata-SSR2-4D Xfbb178-4D locus 30.9 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-4D Xfbb178-4D locus 62.6 () Automated name-based View Maps
Xcdo1312-4D locus 64.4 Wheat ABD - Wheat, Synthetic x Opata, SSR 2 - Ta-Synthetic/Opata-SSR2-4D Xcdo1312-4D locus 40.6 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-4D Xcdo1312-4D locus 41.4 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, DR Genes - Ta-Synthetic/Opata-DR-4D Xcdo1312-4D locus 26.1 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-4D Xcdo1312-4D locus 84.1 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR-D - Ta-Synthetic/Opata-SSR_D-4D Xcdo1312-4D locus 72.1 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, gbx RFLP - Ta-Synthetic/Opata-gbx-4D Xcdo1312-4D locus 80.6 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-4D Xcdo1312-4D locus 73 () Automated name-based View Maps
Xfba177-4D locus 98.1 Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-4D Xfba177-4D locus 121.8 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, gbx RFLP - Ta-Synthetic/Opata-gbx-4D Xfba177-4D locus 115.7 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR 2 - Ta-Synthetic/Opata-SSR2-4D Xfba177-4D locus 77.8 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR-D - Ta-Synthetic/Opata-SSR_D-4D Xfba177-4D locus 112 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-4D Xfba177-4D locus 112.8 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, DR Genes - Ta-Synthetic/Opata-DR-4D Xfba177-4D locus 63.8 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-4D Xfba177-4D locus 78.7 () Automated name-based View Maps
Xbcd1431-4D.1 locus 73.8 Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-4D Xbcd1431-4D.1 locus 95.2 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, gbx RFLP - Ta-Synthetic/Opata-gbx-4D Xbcd1431-4D.1 locus 91.2 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-4D Xbcd1431-4D.1 locus 84 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR-D - Ta-Synthetic/Opata-SSR_D-4D Xbcd1431-4D.1 locus 83.1 () Automated name-based View Maps
Xcdo949-4D locus 105.4 Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-4D Xcdo949-4D locus 124.3 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR-D - Ta-Synthetic/Opata-SSR_D-4D Xcdo949-4D locus 123.5 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-4D Xcdo949-4D locus 125.8 () Automated name-based View Maps
Xgwm608-4D locus 43.2 Wheat ABD - Wheat, Courtot x Chinese Spring, GPW - Ta-Courtot/CS-GPW-4D Xgwm608-4D locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-4D Xgwm608-4D locus 14 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-4D Xgwm608-4D locus 30.8 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-4D Xgwm608-4D locus 45.2 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_4D Xgwm608-4D locus 0.16 () Automated name-based View Maps
Xgwm194-4D locus 95.4 Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-4D Xgwm194-4D locus 67.7 () Automated name-based View Maps
Wheat ABD - Wheat, USG3209 x Jaypee - USG3209/Jaypee-4D Xgwm194-4D locus 18.4 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-4D Xgwm194-4D locus 106.4 () Automated name-based View Maps
Wheat ABD - Wheat, Courtot x Chinese Spring, GPW - Ta-Courtot/CS-GPW-4D Xgwm194-4D locus 105.5 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-4D Xgwm194-4D locus 82 () Automated name-based View Maps
Wheat ABD - Wheat, Forno x Oberkulmer - Triticum-FxO-4DL Xgwm194-4D locus 7 () Automated name-based View Maps
Xfbb13-4D locus 36.2 Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-4D Xfbb13-4D locus 46.6 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-4D Xfbb13-4D locus 4.8 () Automated name-based View Maps
Xfbb336-4D locus 45.6 Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-4D Xfbb336-4D locus 58.4 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-4D Xfbb336-4D locus 10.2 () Automated name-based View Maps
Xfbb251-4D locus 45 Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-4D Xfbb251-4D locus 53.4 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-4D Xfbb251-4D locus 11.1 () Automated name-based View Maps
Xgwm165-4D locus 48.7 Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-4D Xgwm165-4D locus 18.2 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-4D Xgwm165-4D locus 49.8 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_4D Xgwm165-4D locus 0.16 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-4D Xgwm165-4D locus 38.3 () Automated name-based View Maps
Xbcd1117-4D locus 50.2 Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-4D Xbcd1117-4D locus 18.9 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-4D Xbcd1117-4D locus 62.1 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, gbx RFLP - Ta-Synthetic/Opata-gbx-4D Xbcd1117-4D locus 63.2 () Automated name-based View Maps
Xcdo1081-4D locus 75.6 Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-4D Xcdo1081-4D locus 104.1 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-4D Xcdo1081-4D locus 56.4 () Automated name-based View Maps
Xfbb226-4D locus 90 Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-4D Xfbb226-4D locus 100 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-4D Xfbb226-4D locus 112.9 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-4D Xfbb226-4D locus 66.8 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR 2 - Ta-Synthetic/Opata-SSR2-4D Xfbb226-4D locus 65.9 () Automated name-based View Maps
Xbarc98-4D locus 41.2 Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-4D Xbarc98-4D locus 31.8 () Automated name-based View Maps
Wheat ABD - Wheat, Grandin x BR34 - Ta-Grandin/BR34-4D Xbarc98-4D locus 26.7 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_4D Xbarc98-4D locus -0.6 () Automated name-based View Maps
Xbarc334-4D locus 41.8 Wheat ABD - Wheat_Yr79_2018 - Wheat_Yr79_2018-4DS Xbarc334-4D locus 23.2 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Louise x Penawawa - Louise/Penawawa-4D Xbarc334-4D locus 5.6 () Automated name-based View Maps
Xbarc288-4D locus 38.9 Wheat ABD - Wheat, USG3209 x Jaypee - USG3209/Jaypee-4D Xbarc288-4D locus 41.8 () Automated name-based View Maps
Wheat ABD - Wheat, Louise x Penawawa - Louise/Penawawa-4D Xbarc288-4D locus 7.5 () Automated name-based View Maps
Wheat ABD - Wheat_Yr79_2018 - Wheat_Yr79_2018-4DS Xbarc288-4D locus 14.4 (cM) Automated name-based View Maps
Xbcd1431-4D.2 locus 104.6 Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-4D Xbcd1431-4D.2 locus 123.8 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.