*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat ABD-Wheat, Synthetic x Opata, DR Genes
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Ta-Synthetic/Opata-DR-1D
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
baccontig
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Wheat ABD - Wheat, Synthetic x Opata, DR Genes [ View Map Set Info ]
Map Name: Ta-Synthetic/Opata-DR-1D
Map Start: -48.5
Map Stop: 93.6
Features by Type:
4 baccontig
18 locus
22 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 22 of 22.
Wheat ABD - Wheat, Synthetic x Opata, DR Genes - Ta-Synthetic/Opata-DR-1D
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
XGli1-1D locus -48.5 Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-1D XGli1-1D locus 0 () Automated name-based View Maps
XksuD14-1D locus -37.4 No other positions
Xmwg938-1D locus -32.1 Wheat ABD - Wheat, Synthetic x Opata, SSR-D - Ta-Synthetic/Opata-SSR_D-1D Xmwg938-1D locus 7.9 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-1D Xmwg938-1D locus 22.1 () Automated name-based View Maps
Wheat D - 1DS, Ae. tauschii - 1DS, Ae. tauschii Xmwg938-1D locus 17.3 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-1D Xmwg938-1D locus 17.6 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-1D Xmwg938-1D locus 12.5 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-1D Xmwg938-1D locus 6.6 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, gbx RFLP - Ta-Synthetic/Opata-gbx-1D Xmwg938-1D locus 14.2 () Automated name-based View Maps
Wheat D - 1DS, A.tauschii, AUS x CPI - 1DS-A.tauschii-AUSxCPI Xmwg938-1D locus 5.2 () Automated name-based View Maps
Xksu902(Fmt)-1D locus -27.05 No other positions
Xmwg837-1D locus -22 Wheat ABD - Wheat, Synthetic x Opata, gbx RFLP - Ta-Synthetic/Opata-gbx-1D Xmwg837-1D locus 24.6 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-1D Xmwg837-1D locus 18.8 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-1D Xmwg837-1D locus 33.4 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-1D Xmwg837-1D locus 22.2 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR-D - Ta-Synthetic/Opata-SSR_D-1D Xmwg837-1D locus 17.9 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-1D Xmwg837-1D locus 27.3 () Automated name-based View Maps
Xksu901(Chs)-1D locus -19 No other positions
Centromere-1D locus 0 Wheat ABD - Wheat, Arina x Forno - Triticum-AxF-1D Centromere-1D locus 42 () Automated name-based View Maps
Wheat ABD - Wheat, Grandin x BR34 - Ta-Grandin/BR34-1D Centromere-1D locus 41.3 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR 2 - Ta-Synthetic/Opata-SSR2-1D Centromere-1D locus 68.9 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR-D - Ta-Synthetic/Opata-SSR_D-1D Centromere-1D locus 56.8 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, gbx RFLP - Ta-Synthetic/Opata-gbx-1D Centromere-1D locus 46 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, R Genes - Ta-Physical-RGenes-1D Centromere-1D locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-1D Centromere-1D locus 50.5 - 54.7 () Automated name-based View Maps
Xcdo312-1D locus 11.7 Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-1D Xcdo312-1D locus 111.9 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-1D Xcdo312-1D locus 91.1 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-1D Xcdo312-1D locus 70.4 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-1D Xcdo312-1D locus 67.4 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR-D - Ta-Synthetic/Opata-SSR_D-1D Xcdo312-1D locus 91.6 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR 2 - Ta-Synthetic/Opata-SSR2-1D Xcdo312-1D locus 96.8 () Automated name-based View Maps
XksuG55-1D locus 18.9 Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-1D XksuG55-1D locus 112.2 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-1D XksuG55-1D locus 77.6 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR-D - Ta-Synthetic/Opata-SSR_D-1D XksuG55-1D locus 98.7 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-1D XksuG55-1D locus 75.5 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-1D XksuG55-1D locus 119 () Automated name-based View Maps
XksuD49-1D locus 19.8 Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-1D XksuD49-1D locus 76.2 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-1D XksuD49-1D locus 113.8 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, gbx RFLP - Ta-Synthetic/Opata-gbx-1D XksuD49-1D locus 71.8 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-1D XksuD49-1D locus 78.5 () Automated name-based View Maps
XksuG2-1D locus 22.7 Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-1D XksuG2-1D locus 78.9 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-1D XksuG2-1D locus 121.9 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-1D XksuG2-1D locus 81.4 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR-D - Ta-Synthetic/Opata-SSR_D-1D XksuG2-1D locus 101.6 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-1D XksuG2-1D locus 105.1 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, gbx RFLP - Ta-Synthetic/Opata-gbx-1D XksuG2-1D locus 74.8 () Automated name-based View Maps
Xmwg733-1D locus 31.1 Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-1D Xmwg733-1D locus 114.1 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR 2 - Ta-Synthetic/Opata-SSR2-1D Xmwg733-1D locus 122.6 () Automated name-based View Maps
Xmwg701-1D locus 50 Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-1D Xmwg701-1D locus 134 () Automated name-based View Maps
Xcsd19(Adh)-1D locus 50.7 Rye - Rye, Ds2 x RxL10 - Secale-Devos-1R Xcsd19(Adh) locus 19.8 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR-D - Ta-Synthetic/Opata-SSR_D-1D Xcsd19(Adh)-1D locus 128.7 () Automated name-based View Maps
Wheat A - T. monococcum, G1777 x G2528 - Tm-Dubcovsky-1A XAdh3 locus 22.3 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR 2 - Ta-Synthetic/Opata-SSR2-1D Xcsd19(Adh)-1D locus 143 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-1D Xcsd19(Adh)-1D locus 109.4 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, gbx RFLP - Ta-Synthetic/Opata-gbx-1D Xcsd19(Adh)-1D locus 102.5 () Automated name-based View Maps
Wheat ABD - Wheat, Gale - Ta-Gale-1D Xcsd19(Adh)-1D locus 42.7 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1A XAdh3 locus 84 () Automated name-based View Maps
Wheat ABD - Wheat, CS x CS-CNN DS1A - Ta-Dubcovsky-1A XAdh3 locus 37.2 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-1R Xcsd19(Adh) locus 97.4 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-1ABD Xcsd19(Adh) locus 86 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-1D Xcsd19(Adh)-1D locus 105.6 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1D Xcsd19(Adh) locus 91 () Automated name-based View Maps
Wheat ABD - Triticum, CS-G1777 DS1A^m^(1A) RSL - TmTa-Dubcovsky-1A XAdh3 locus 60.7 () Automated name-based View Maps
Xbcd1261-1D locus 73.6 Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-1D Xbcd1261-1D locus 175.5 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, gbx RFLP - Ta-Synthetic/Opata-gbx-1D Xbcd1261-1D locus 125.9 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-1D Xbcd1261-1D locus 162.1 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-1D Xbcd1261-1D locus 132.3 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR 2 - Ta-Synthetic/Opata-SSR2-1D Xbcd1261-1D locus 171.1 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-1D Xbcd1261-1D locus 133.8 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR-D - Ta-Synthetic/Opata-SSR_D-1D Xbcd1261-1D locus 156.1 () Automated name-based View Maps
XksuE11-1D locus 84.3 Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-1D XksuE11-1D locus 143 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-1D XksuE11-1D locus 174 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-1D XksuE11-1D locus 147.2 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR-D - Ta-Synthetic/Opata-SSR_D-1D XksuE11-1D locus 166.1 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-1D XksuE11-1D locus 186 () Automated name-based View Maps
XksuI27-1D locus 89.4 Wheat ABD - Wheat, Synthetic x Opata, SSR-D - Ta-Synthetic/Opata-SSR_D-1D XksuI27-1D locus 171.2 () Automated name-based View Maps
Xwg241-1D locus 93.6 Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-1D Xwg241-1D locus 182.8 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-1D Xwg241-1D locus 154.3 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-1D Xwg241-1D locus 195.3 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR 2 - Ta-Synthetic/Opata-SSR2-1D Xwg241-1D locus 191.8 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-1D Xwg241-1D locus 152.1 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, gbx RFLP - Ta-Synthetic/Opata-gbx-1D Xwg241-1D locus 155.8 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR-D - Ta-Synthetic/Opata-SSR_D-1D Xwg241-1D locus 175.4 () Automated name-based View Maps
D1.1_ctg4643 baccontig 22.7 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1D D1.1_ctg4643 baccontig 82 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-1D D1.1_ctg4643 baccontig 78.9 () Automated name-based View Maps
Wheat ABD - Wheat, Yr Update, 2021 - Wheat_Yr_2021-1D D1.1_ctg4643 baccontig 109.71 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 1D D1.1_ctg4643 baccontig 55.2 () Automated name-based View Maps
D1.1_ctg5083 baccontig 89.4 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-1D D1.1_ctg5083 baccontig 4.46 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1D D1.1_ctg5083 baccontig 118 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2D D1.1_ctg5083 baccontig -3.08 () Automated name-based, Automated name-based View Maps
D1.1_ctg6587 baccontig 22.7 Wheat ABD - Wheat, Yr Update, 2021 - Wheat_Yr_2021-1D D1.1_ctg6587 baccontig 109.71 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1D D1.1_ctg6587 baccontig 82 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 1D D1.1_ctg6587 baccontig 55.2 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-1D D1.1_ctg6587 baccontig 78.9 () Automated name-based View Maps
D1.1_ctg7441 baccontig 18.9 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1D D1.1_ctg7441 baccontig 81 () Automated name-based View Maps
Wheat ABD - Wheat, Yr Update, 2021 - Wheat_Yr_2021-1D D1.1_ctg7441 baccontig 104.24 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-1D D1.1_ctg7441 baccontig 75.5 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 1D D1.1_ctg7441 baccontig 52.4 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.