*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat ABD-Wheat, Synthetic x Opata, SSR 2
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Ta-Synthetic/Opata-SSR2-5A
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Wheat ABD - Wheat, Synthetic x Opata, SSR 2 [ View Map Set Info ]
Map Name: Ta-Synthetic/Opata-SSR2-5A
Map Start: 0
Map Stop: 201.3
Features by Type:
18 locus
18 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 18 of 18.
Wheat ABD - Wheat, Synthetic x Opata, SSR 2 - Ta-Synthetic/Opata-SSR2-5A
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xwmc327-5A locus 113.2 Wheat ABD - Wheat, Louise x Penawawa - Louise/Penawawa-5A Xwmc327-5A locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Chinese Spring x SQ1 - CS/SQ1-5A Xwmc327-5A locus 91.6 () Automated name-based View Maps
Xbcd1871-5A locus 37.1 Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-5A Xbcd1871-5A locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-5A Xbcd1871-5A locus 38 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-5A Xbcd1871-5A locus 20.3 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, DR Genes - Ta-Synthetic/Opata-DR-5A Xbcd1871-5A locus -9.8 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-5A Xbcd1871-5A locus 13.9 () Automated name-based View Maps
Centromere-5A locus 60.8 Wheat ABD - Wheat, Grandin x BR34 - Ta-Grandin/BR34-5A Centromere-5A locus 36.2 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, R Genes - Ta-Physical-RGenes-5A Centromere-5A locus 0 () Automated name-based View Maps
Wheat AB - T. turgidum, JK x Cham1 - Tturgidum-JKxC-5A Centromere-5A locus 33.1 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, DR Genes - Ta-Synthetic/Opata-DR-5A Centromere-5A locus 0 () Automated name-based View Maps
Wheat AB - T. turgidum, Messapia x dicoccoides, AFLP - Tturgidum-MxM-AFLP-5A Centromere-5A locus 120.4 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, gbx RFLP - Ta-Synthetic/Opata-gbx-5A Centromere-5A locus 15 () Automated name-based View Maps
Wheat ABD - 5A, DS 5AIran - 5A, DS 5AIran Centromere-5A locus 35.2 () Automated name-based View Maps
Wheat AB - T. turgidum, Messapia x dicoccoides, SSR - Tturgidum-SSR-5A Centromere-5A locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Arina x Forno - Triticum-AxF-5A Centromere-5A locus 20 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-5A Centromere-5A locus 25.3 - 29.1 () Automated name-based View Maps
Wheat AB - T. turgidum, Omrabi5 x dicoccoides, QTL - Tt-Oxd-QTL-5A Centromere-5A locus 47.8 () Automated name-based View Maps
Wheat ABD - Wheat, WxM, FHB QTL - Triticum-WxM-FHB-QTL-5A Centromere-5A locus 46 () Automated name-based View Maps
Wheat ABD - Wheat, Forno x Oberkulmer - Triticum-FxO-5A Centromere-5A locus 91 () Automated name-based View Maps
Wheat AB - T. turgidum, Messapia x dicoccoides - Tturgidum-MxM-5A Centromere-5A locus 0 () Automated name-based View Maps
Wheat AB - Durum wheat, Svevo x Ciccio - Svevo/Ciccio-5A Centromere-5A locus 13.1 () Automated name-based View Maps
Xbcd1355-5A locus 72.3 Wheat ABD - Wheat, Synthetic x Opata, DR Genes - Ta-Synthetic/Opata-DR-5A Xbcd1355-5A locus 13.1 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-5A Xbcd1355-5A locus 43.2 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-5A Xbcd1355-5A locus 23.2 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-5A Xbcd1355-5A locus 59.3 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-5A Xbcd1355-5A locus 37.4 () Automated name-based View Maps
Xcdo1090-5A locus 85.2 Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-5A Xcdo1090-5A locus 48 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-5A Xcdo1090-5A locus 37.8 () Automated name-based View Maps
Wheat AB - T. turgidum, JK x Cham1, 2 - Tturgidum-JKxC2-5A Xcdo1090-5A locus 18.6 () Automated name-based View Maps
Wheat AB - T. turgidum, JK x Cham1 - Tturgidum-JKxC-5A Xcdo1090-5A locus 38.1 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-5A Xcdo1090-5A locus 74.1 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, DR Genes - Ta-Synthetic/Opata-DR-5A Xcdo1090-5A locus 33.7 () Automated name-based View Maps
Xbcd1235-5A locus 106 Wheat ABD - Wheat, Synthetic x Opata, DR Genes - Ta-Synthetic/Opata-DR-5A Xbcd1235-5A locus 56.3 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-5A Xbcd1235-5A locus 157.5 () Automated name-based View Maps
Xbcd183-5A locus 122.1 Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-5A Xbcd183-5A locus 73 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, gbx RFLP - Ta-Synthetic/Opata-gbx-5A Xbcd183-5A locus 67.8 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-5A Xbcd183-5A locus 105.4 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-5A Xbcd183-5A locus 68.3 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, DR Genes - Ta-Synthetic/Opata-DR-5A Xbcd183-5A locus 71.2 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-5A Xbcd183-5A locus 102.9 () Automated name-based View Maps
Xrz395-5A locus 143.2 Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-5A Xrz395-5A locus 90.8 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-5A Xrz395-5A locus 76.7 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-5A Xrz395-5A locus 122.1 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, DR Genes - Ta-Synthetic/Opata-DR-5A Xrz395-5A locus 89.5 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-5A Xrz395-5A locus 126.8 () Automated name-based View Maps
Xfba351-5A locus 157.8 Wheat ABD - Wheat, Synthetic x Opata, DR Genes - Ta-Synthetic/Opata-DR-5A Xfba351-5A locus 106.1 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-5A Xfba351-5A locus 91.2 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-5A Xfba351-5A locus 106.1 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, gbx RFLP - Ta-Synthetic/Opata-gbx-5A Xfba351-5A locus 105.4 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-5A Xfba351-5A locus 141.4 () Automated name-based View Maps
Xmwg2112-5A locus 201.3 Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-5A Xmwg2112-5A locus 184.9 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, gbx RFLP - Ta-Synthetic/Opata-gbx-5A Xmwg2112-5A locus 146.2 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-5A Xmwg2112-5A locus 127 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-5A Xmwg2112-5A locus 143 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, DR Genes - Ta-Synthetic/Opata-DR-5A Xmwg2112-5A locus 143 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-5A Xmwg2112-5A locus 175.1 () Automated name-based View Maps
Xpsr170-5A locus 0 Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-5A Xpsr170-5A locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Gale - Ta-Gale-5A Xpsr170-5A locus -32.1 () Automated name-based View Maps
XgbxR665-5A locus 10.4 Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-5A XgbxR665-5A locus 9.8 () Automated name-based View Maps
Xgwm154-5A locus 21.3 Wheat A - T. boeoticum x monococcum - T.b.xT.m.-5A Xgwm154-5A locus 64.3 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_5A Xgwm154-5A locus -0.86 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-5A Xgwm154-5A locus 4.1 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-5A Xgwm154-5A locus 22.2 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-5A Xgwm154-5A locus 10.35 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-5A Xgwm154-5A locus 34.3 () Automated name-based View Maps
Wheat ABD - Wheat, WxM, FHB QTL - Triticum-WxM-FHB-QTL-5A Xgwm154-5A locus 28 () Automated name-based View Maps
XgbxG625-5A locus 28.9 Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-5A XgbxG625-5A locus 29.5 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, gbx RFLP - Ta-Synthetic/Opata-gbx-5A XgbxG625-5A locus 0 () Automated name-based View Maps
Xwmc96-5A locus 48.8 Wheat ABD - Wheat, Arina x Forno - Triticum-AxF-5A Xwmc96-5A locus 33.4 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-5A Xwmc96-5A locus 99.2 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-5A Xwmc96-5A locus 45.1 () Automated name-based View Maps
Xcdo457-5A locus 172.8 Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-5A Xcdo457-5A locus 156.4 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-5A Xcdo457-5A locus 105.3 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-5A Xcdo457-5A locus 115.7 () Automated name-based View Maps
Xwg114-5A locus 181.7 Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-5A Xwg114-5A locus 113.9 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-5A Xwg114-5A locus 135.6 () Automated name-based View Maps
Wheat ABD - 5AL, CS q deletions, physical - 5AL, q deletions Xwg114-5A locus 90.5 () Automated name-based View Maps
Wheat ABD - 5A, DS 5AIran - 5A, DS 5AIran Xwg114-5A locus 186.3 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-5A Xwg114-5A locus 165.3 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-5A Xwg114-5A locus 159.2 () Automated name-based View Maps
Xwmc215-5A locus 88.9 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.