*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat ABD-Wheat, USG3209 x Jaypee
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps USG3209/Jaypee-2A
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
qtl
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Wheat ABD - Wheat, USG3209 x Jaypee [ View Map Set Info ]
Map Name: USG3209/Jaypee-2A
Map Start: 0
Map Stop: 203.1
Features by Type:
24 locus
1 qtl
25 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 25.
Wheat ABD - Wheat, USG3209 x Jaypee - USG3209/Jaypee-2A
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xgwm122-2A locus 114.3 Wheat ABD - Wheat, Chinese Spring x SQ1 - CS/SQ1-2A Xgwm122-2A locus 103.2 () Automated name-based View Maps
Wheat ABD - Wheat, Conan x Reeder - Conan/Reeder-2A Xgwm122-2A locus 448.29 () Automated name-based View Maps
Wheat ABD - Wheat, 2006, purple grain - Wheat_Novo67xPurpleFeed_2006-2A Xgwm122-2A locus 0 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-2A Xgwm122-2A locus 112.6 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_2A Xgwm122-2A locus -0.39 () Automated name-based View Maps
Wheat AB - T. turgidum, Messapia x dicoccoides, SSR - Tturgidum-SSR-2A Xgwm122-2A locus -17.8 () Automated name-based View Maps
Wheat AB - Durum wheat, Kofa x UC1113 - Kofa/UC1113-2A Xgwm122-2A locus 55.9 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-2A Xgwm122-2A locus 78.9 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-2A Xgwm122-2A locus 96.5 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-2A Xgwm122-2A locus 51.1 () Automated name-based View Maps
Xgwm339-2A locus 99.5 Wheat ABD - Wheat, Chinese Spring x SQ1 - CS/SQ1-2A Xgwm339-2A locus 104.4 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-2A Xgwm339-2A locus 96.4 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-2A Xgwm339-2A locus 78.3 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-2A Xgwm339-2A locus 51.4 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-2A Xgwm339-2A locus 108 () Automated name-based View Maps
Xgwm515-2A locus 88.8 Wheat ABD - Wheat, Chinese Spring x SQ1 - CS/SQ1-2A Xgwm515-2A locus 104.4 () Automated name-based View Maps
Wheat A - T. boeoticum x monococcum - T.b.xT.m.-2A Xgwm515-2A locus 91.3 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-2A Xgwm515-2A locus 51.7 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-2A Xgwm515-2A locus 109.1 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_2A Xgwm515-2A locus -0.39 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-2A Xgwm515-2A locus 96.2 () Automated name-based View Maps
Wheat AB - Durum wheat, Kofa x UC1113 - Kofa/UC1113-2A Xgwm515-2A locus 70 () Automated name-based View Maps
Wheat ABD - Wheat, Courtot x Chinese Spring, GPW - Ta-Courtot/CS-GPW-2A Xgwm515-2A locus 38.1 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-2A Xgwm515-2A locus 77.9 () Automated name-based View Maps
Xgwm636-2A locus 33.6 Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-2A Xgwm636-2A locus 41.3 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_2A Xgwm636-2A locus -0.89 () Automated name-based View Maps
Wheat A - T. boeoticum x monococcum - T.b.xT.m.-2A Xgwm636-2A locus 33.9 () Automated name-based View Maps
Wheat ABD - Wheat_Yr69_2016 - Wheat_Yr69_2016-2A Xgwm636-2A locus 0 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-2A Xgwm636-2A locus 11 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-2A Xgwm636-2A locus 4 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-2A Xgwm636-2A locus -3 () Automated name-based View Maps
Xcfd36-2A locus 0 Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-2A Xcfd36-2A locus 17.6 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-2A Xcfd36-2A locus 54.2 () Automated name-based View Maps
Xgwm448-2A locus 104.2 Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-2A Xgwm448-2A locus 108.5 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-2A Xgwm448-2A locus 95.9 () Automated name-based View Maps
Wheat AB - T. turgidum, Omrabi5 x dicoccoides, QTL - Tt-Oxd-QTL-2A Xgwm448-2A locus 209 () Automated name-based View Maps
Wheat AB - T. turgidum, Messapia x dicoccoides, SSR - Tturgidum-SSR-2A Xgwm448-2A locus -11.5 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-2A Xgwm448-2A locus 78 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_2A Xgwm448-2A locus -0.89 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-2A Xgwm448-2A locus 52 () Automated name-based View Maps
Xgwm95-2A locus 127.7 Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-2A Xgwm95-2A locus 95.7 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-2A Xgwm95-2A locus 77.7 () Automated name-based View Maps
Wheat AB - T. turgidum, Omrabi5 x dicoccoides, QTL - Tt-Oxd-QTL-2A Xgwm95-2A locus 229.9 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-2A Xgwm95-2A locus 110.4 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_2A Xgwm95-2A locus -0.39 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-2A Xgwm95-2A locus 52.5 () Automated name-based View Maps
Wheat ABD - Wheat, P91193D1 x P92201D5 - P91193D1/P92201D5-2A Xgwm95-2A locus 89.9 () Automated name-based View Maps
Xwmc382-2A locus 37.4 Wheat AB - Durum wheat, Kofa x UC1113 - Kofa/UC1113-2A Xwmc382-2A locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-2A Xwmc382-2A locus 6 () Automated name-based View Maps
Wheat ABD - Wheat_Yr69_2016 - Wheat_Yr69_2016-2A Xwmc382-2A locus 6.8 (cM) Automated name-based View Maps
Wheat A - T. boeoticum x monococcum - T.b.xT.m.-2A Xwmc382-2A locus 23.6 () Automated name-based View Maps
Xwmc522-2A locus 81.3 Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-2A Xwmc522-2A locus 45 () Automated name-based View Maps
Wheat ABD - Wheat, Louise x Penawawa - Louise/Penawawa-2A Xwmc522-2A locus 0 () Automated name-based View Maps
Xwmc453-2A locus 73.9 Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-2A Xwmc453-2A locus 41.2 () Automated name-based View Maps
Xgwm304-2A locus 187.7 No other positions
Xgwm425-2A.1 locus 88.9 No other positions
Xgwm425-2A.2 locus 88.9 No other positions
Xgwm275-2A.1 locus 91 No other positions
Xgwm275-2A.2 locus 101 No other positions
Xbe442788-2A locus 153.8 Wheat D - Aegilops_tauschii_D_genome_2013 - Aegilops_tauschii_2013_2D BE442788 locus 110.27 () Automated name-based View Maps
Xgwm528-2A locus 156.3 No other positions
Xcfa2293-2A locus 157 No other positions
XwPt5251-2A locus 163.3 No other positions
XwPt3209-2A locus 163.3 No other positions
XwPt8826-2A locus 170.2 No other positions
Xbarc1015-2A locus 179 No other positions
Xbarc152-2A locus 179.5 No other positions
Xbarc353-2A locus 203.1 No other positions
QPm.vag-2A qtl 104.2 - 127.7 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.