*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat ABD-Wheat deletion-line bins
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps CS-deletions-1B
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
breakpointinterval
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Cytogenetic [ View Map Type Info ]
Map Set Name: Wheat ABD - Wheat deletion-line bins [ View Map Set Info ]
Map Name: CS-deletions-1B
Map Start: -1.4
Map Stop: 1
Features by Type:
11 breakpointinterval
11 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 11 of 11.
Wheat ABD - Wheat deletion-line bins - CS-deletions-1B
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
1BS.sat-0.31 breakpointinterval -1.2 - -1.06 Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_1B 1BS.sat-0.31 breakpointinterval -1.2 - -1.06 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_1B 1BS.sat-0.31 breakpointinterval -1.2 - -1.06 () Automated name-based View Maps
C-1BS10-0.50 breakpointinterval -0.5 - 0 Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_1B C-1BS10-0.50 breakpointinterval -0.5 - 0 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_1B C-1BS10-0.50 breakpointinterval -0.5 - 0 () Automated name-based View Maps
1BL1-0.47-0.69 breakpointinterval 0.47 - 0.69 Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_1B 1BL1-0.47-0.69 breakpointinterval 0.47 - 0.69 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_1B 1BL1-0.47-0.69 breakpointinterval 0.47 - 0.69 () Automated name-based View Maps
1BS.sat18-0.50-1.00 breakpointinterval -1.4 - -1.25 Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_1B 1BS.sat18-0.50-1.00 breakpointinterval -1.4 - -1.25 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_1B 1BS.sat18-0.50-1.00 breakpointinterval -1.4 - -1.25 () Automated name-based View Maps
1BS.sat19-0.31-0.50 breakpointinterval -1.25 - -1.2 Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_1B 1BS.sat19-0.31-0.50 breakpointinterval -1.25 - -1.2 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_1B 1BS.sat19-0.31-0.50 breakpointinterval -1.25 - -1.2 () Automated name-based View Maps
1BS9-0.84-1.06 breakpointinterval -1.06 - -0.84 Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_1B 1BS9-0.84-1.06 breakpointinterval -1.06 - -0.84 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_1B 1BS9-0.84-1.06 breakpointinterval -1.06 - -0.84 () Automated name-based View Maps
1BS10-0.50-0.84 breakpointinterval -0.84 - -0.5 Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_1B 1BS10-0.50-0.84 breakpointinterval -0.84 - -0.5 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_1B 1BS10-0.50-0.84 breakpointinterval -0.84 - -0.5 () Automated name-based View Maps
C-1BL6-0.32 breakpointinterval 0 - 0.32 Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_1B C-1BL6-0.32 breakpointinterval 0 - 0.32 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_1B C-1BL6-0.32 breakpointinterval 0 - 0.32 () Automated name-based View Maps
1BL6-0.32-0.47 breakpointinterval 0.32 - 0.47 Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_1B 1BL6-0.32-0.47 breakpointinterval 0.32 - 0.47 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_1B 1BL6-0.32-0.47 breakpointinterval 0.32 - 0.47 () Automated name-based View Maps
1BL2-0.69-0.83 breakpointinterval 0.69 - 0.83 No other positions
1BL3-0.83-1.00 breakpointinterval 0.83 - 1 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.